| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,876,872 – 4,876,967 |
| Length | 95 |
| Max. P | 0.656056 |
| Location | 4,876,872 – 4,876,967 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.62 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -20.55 |
| Energy contribution | -20.88 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4876872 95 - 27905053 GCGAU------AGACCGCUGAAAUGCUGGGUGAUCCUCUCCUCGGUUAUAAGCAUUUUGGGUGGUCUGCAAUG-AGUUCUGUGGUUAGUAUUUUAUGUGGAU- .....------(((((((..(((((((..((((((........)))))).)))))))..).))))))(((..(-(((.(((....))).))))..)))....- ( -27.40) >DroPse_CAF1 8337 103 - 1 CCGAAAUCUGCAAUCCACUGAAGUGCUGUGUGAUCCGCUCCUCUGUAAUCAGCAUUUUCGGUGGGCUAAAAAACCGGAUUGUCGUUAGUGUCUGGCGGGGAUU ....(((((.(..(((((((((((((((...((........))......))))).))))))))))........((((((...(....).)))))).).))))) ( -29.50) >DroSec_CAF1 8356 95 - 1 GCGAU------AGACCGCUGAAAUGCUGGGUGAUCCUCUCCUCGGUUAUAAGCAUUUUGGGUGGUCUGCAAUG-AGUUCUGUGGUUAGUAUUUUAUGGAGAU- ..(.(------(((((((..(((((((..((((((........)))))).)))))))..).))))))))....-..((((((((........))))))))..- ( -29.50) >DroEre_CAF1 9371 95 - 1 GCGAU------AGACCGCUAAAAUGCUGGGUGAUCCUCUCCUCGGUUAUAAGCAUUUUGGGUGGUCUGCAAUG-CGUUCUAUGGUUAGUAUAUGAUGGGGAU- (((.(------((((((((((((((((..((((((........)))))).)))))))).)))))))))...))-).((((((.((......)).))))))..- ( -31.90) >DroYak_CAF1 8466 95 - 1 GCGAU------AGACCGCUGAAAUGCUGGGUGAUCCUCUCCUCGGUUAUAAGCAUUUUGGGUGGUCUGCAAUG-CAUUCUAUGGUUAGUAUAUGAAGGGGGU- (((.(------(((((((..(((((((..((((((........)))))).)))))))..).)))))))...))-)(((((....(((.....)))..)))))- ( -28.40) >DroPer_CAF1 8416 103 - 1 CCGAAAUCUGCAAUCCACUGAAGUGCUGUGUGAUCCGCUCCUCUGUAAUCAGCAUUUUCGGUGGGCUAAAAAACCGGAUUGUCGUUAGUGUCUGGCGGGGAUU ....(((((.(..(((((((((((((((...((........))......))))).))))))))))........((((((...(....).)))))).).))))) ( -29.50) >consensus GCGAU______AGACCGCUGAAAUGCUGGGUGAUCCUCUCCUCGGUUAUAAGCAUUUUGGGUGGUCUGCAAUG_CGUUCUGUGGUUAGUAUAUGAUGGGGAU_ ...........((((((((((((((((..((((((........)))))).)))))))).)))))))).........((((((((........))))))))... (-20.55 = -20.88 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:11 2006