Locus 1699

Sequence ID 3R_DroMel_CAF1
Location 4,872,819 – 4,872,915
Length 96
Max. P 0.611578
window2799

overview

Window 9

Location 4,872,819 – 4,872,915
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.11
Mean single sequence MFE -26.56
Consensus MFE -15.63
Energy contribution -16.86
Covariance contribution 1.23
Combinations/Pair 1.37
Mean z-score -1.58
Structure conservation index 0.59
SVM decision value 0.16
SVM RNA-class probability 0.611578
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4872819 96 + 27905053
AUGUUGCCAAAACUGGUGACAUUAGCAACGCCGAAACUAACGCCAGUGGAGUUUAUUAAA------UUGGUAGCACCCAAUUGGCAAAUUCCGCCGUUGUUC
((((..(((....)))..)))).(((((((......(....)...(((((((((....((------((((......))))))...)))))))))))))))). ( -29.80)
>DroSec_CAF1 4399 102 + 1
GUGUUGCCAAAAUUGGUUACAUUAGCAACGCCGACACCAGCGCCAGUGGAGUUCAUUAAAUUGAAAUUGGUAGCAUCCAAUUGGGAAAUUCCGCCGUUGUUC
((((.((((....)))).)))).(((((((.((......((((((((....((((......)))))))))).)).(((.....))).....)).))))))). ( -26.90)
>DroSim_CAF1 4435 102 + 1
GUGUUGCCAAAAUUGGUGACAUUAGCAACGCCGACACCAGCGCCAGUGGAGUUCAUUAAAUUGAAAUUGGUAGCAUCCAAUUGGCAAAUUCCGCCGUUGUUC
((((..(((....)))..)))).(((((((.((........((((((((((((.(((((.......)))))))).))).))))))......)).))))))). ( -29.84)
>DroEre_CAF1 5322 96 + 1
AUGUUGCCAAAACUGGUGACAUUAGCAACGCCGACACCAACGCCAGCGGAGUUGAUUAAA------UUGGUAGCAUCCAAUUGGCAAAUUCCGCCGUUGUUC
((((..(((....)))..)))).(((((((.((.......))...((((((((.....((------((((......))))))....))))))))))))))). ( -31.80)
>DroYak_CAF1 4470 96 + 1
AUGUUCCCGAAACUGGUGACAUUAGCAACGCCGACACCAACGCCAGCGGAGUUGAUUAAA------UUGGUAGCAUCCAAUUGGCAAAUUCCGUCGUUGUUC
((((..(((....)))..))))...............(((((...((((((((.....((------((((......))))))....)))))))))))))... ( -26.10)
>DroAna_CAF1 6065 78 + 1
AUAUUGCCAAAAUUCAUGGCGUUCGGGACAC------------CAGAGGAAUUUAACAAA------UUAGUCGCGUCCAG-AGUCAAA-----CCGCCAUUC
...............(((((((((.((((..------------..((..((((.....))------))..))..)))).)-)).....-----.)))))).. ( -14.90)
>consensus
AUGUUGCCAAAACUGGUGACAUUAGCAACGCCGACACCAACGCCAGUGGAGUUCAUUAAA______UUGGUAGCAUCCAAUUGGCAAAUUCCGCCGUUGUUC
(((((((((....)))))))))...............(((((...((((((((..((((.......((((......))))))))..)))))))))))))... (-15.63 = -16.86 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:10 2006