Locus 1697

Sequence ID 3R_DroMel_CAF1
Location 4,871,353 – 4,871,446
Length 93
Max. P 0.605977
window2796

overview

Window 6

Location 4,871,353 – 4,871,446
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 83.01
Mean single sequence MFE -31.60
Consensus MFE -21.81
Energy contribution -24.37
Covariance contribution 2.56
Combinations/Pair 1.13
Mean z-score -1.86
Structure conservation index 0.69
SVM decision value 0.15
SVM RNA-class probability 0.605977
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4871353 93 + 27905053
UCACUUAUAGUCUGAUCAUGCUGUGAAAGGUUUGGCAAGCCAUUUGGUGGCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA
.........(((..(..((((((.....((((((((.((((((...))))))..)))))))))))))).)..))).................. ( -33.40)
>DroSec_CAF1 2933 93 + 1
UGACUUAUAGUCUGUUCAUGCUGCGAAAGGUUUGGCAAGCCAUUUGGUGCCUGCGCCAAGCAUAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA
((((((...(((((((((((((((....)(((((((..(((....)))(....)))))))).)))))...))))))))).....))))))... ( -31.30)
>DroSim_CAF1 2969 93 + 1
UGACUUAUAGUCUGUUCAUGCUGCGAAAGGUUUGGCAAGCCAUUUGGUGCCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA
((((((...(((((((((....(((...((((((((..(((....)))(....)))))))))...)))..))))))))).....))))))... ( -33.40)
>DroEre_CAF1 3814 93 + 1
UGACUUAUAGUCUGAUCAUGCUGCGAAAGGUUUAUCAAGCCAUUUGCAGGCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUG
((((((..............(((((((.((((.....)))).)))))))((((.(....((((((....))))))....)))))))))))... ( -30.40)
>DroYak_CAF1 3025 93 + 1
UGACUUAUCGUCUGACCAUGCUGCGAAAGGUUUGGCAGGCCAUUCGGUGGCUGAGCCAAGCCCAGCGUUCUGGGCAGAUCCAGAGAGUUAUUG
((((((.(((((((.((((((((.....((((((((.((((((...))))))..)))))))))))))...))).)))))...))))))))... ( -37.70)
>DroMoj_CAF1 4137 81 + 1
UGACUAAUUGUCUGAUCAUGCUGUGACACGUUGGCCACGCCCU------GCUGCG------GCACCGUCUUGGGCAGCUCGACUGAGUUGUUU
.(((.....))).(((..((((((..((....(((...))).)------)..)))------)))..)))..(((((((((....))))))))) ( -23.40)
>consensus
UGACUUAUAGUCUGAUCAUGCUGCGAAAGGUUUGGCAAGCCAUUUGGUGGCUGCGCCAAGCCCAGCGUUUUGGGCAGAUCCAGCGAGUUAUUA
((((((...(((((..(((((((.....((((((((.(((((.....)))))..)))))))))))))...))..))))).....))))))... (-21.81 = -24.37 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:07 2006