Locus 1695

Sequence ID 3R_DroMel_CAF1
Location 4,865,110 – 4,865,213
Length 103
Max. P 0.982645
window2793

overview

Window 3

Location 4,865,110 – 4,865,213
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 94.20
Mean single sequence MFE -29.04
Consensus MFE -24.42
Energy contribution -24.82
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -2.07
Structure conservation index 0.84
SVM decision value 1.92
SVM RNA-class probability 0.982645
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4865110 103 + 27905053
GCAUUUUAAAGCUUUGCCUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUUAGUGUGACCGCGUUAGUAUUUAAACAUGACAGUCCAGCUUU
((.......((((((..((((.......))))..))))))((.(((((((..(.....-...)..)))))))))((((((......)).))))......))... ( -24.10)
>DroSec_CAF1 45447 103 + 1
GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUUAGUGUGACCGCGUUAGUAUUUAAACGUGACAGGCCAGCUUU
((.......(((((..(((((.......)))))..)))))((((((((((..(.....-...)..)))))))(((((........)))))....)))..))... ( -30.90)
>DroSim_CAF1 47438 103 + 1
GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUUAGUGUGACCGCGUUAGUAUUUAAACGUGAAAGGCCUGCUUU
(((......(((((..(((((.......)))))..)))))((((((((((..(.....-...)..)))))))(((((........)))))....))).)))... ( -31.30)
>DroEre_CAF1 46067 104 + 1
GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUUUUUUUAGUGUGACCGCGUAAGUGUUUAAAUGUGACAGGCGAACUUU
.........(((((..(((((.......)))))..)))))(((.((((((..(((........))).(((.(((....))).)))..)))))).)))....... ( -30.00)
>DroYak_CAF1 46342 103 + 1
GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU-UUUAAGUGUGACCGCGUUAGUGUUUAAAUGUGACAGGCGAACUUU
.........(((((..(((((.......)))))..)))))(((.((((((..((((..-...)))).(((.(((....))).)))..)))))).)))....... ( -28.90)
>consensus
GCAUUUUAAAGCUUUGUUUAAUUGUUAUUUGGAUGGAGCUGCCGGUCGCAAGGCUUUU_UUUUAGUGUGACCGCGUUAGUAUUUAAACGUGACAGGCCAGCUUU
.........((((..((((((.......))))))..))))(((((((((...(((........)))))))))(((((........)))))....)))....... (-24.42 = -24.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:04 2006