Locus 1692

Sequence ID 3R_DroMel_CAF1
Location 4,860,669 – 4,860,762
Length 93
Max. P 0.931951
window2789

overview

Window 9

Location 4,860,669 – 4,860,762
Length 93
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 80.40
Mean single sequence MFE -31.72
Consensus MFE -21.15
Energy contribution -20.32
Covariance contribution -0.83
Combinations/Pair 1.24
Mean z-score -2.55
Structure conservation index 0.67
SVM decision value 1.22
SVM RNA-class probability 0.931951
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4860669 93 + 27905053
UCUGGCGUCUG------AUCAUCCUUUAUCCUUUAUGGAUGCCACGCUGCCAUUGAUGGAGGAUG-AUAAUUGCGCCGAGCGCUCCUUA-------------UCCUCAUCC----UC
...(((((...------(((((((((((((....((((..((...))..)))).)))))))))))-))....)))))(((.(.......-------------.))))....----.. ( -31.50)
>DroSec_CAF1 41151 93 + 1
UCUGGCGUCUG------AUCAUCCUUUAUCCUUUAUGGAUGCCACGCUGCCAUUGAUGGAGGAUG-AUAAUUGCGCUGAGCGCUCCUCA-------------UCCUCAUCC----UC
..((((((.((------..(((((............))))).)).)).))))..((((.((((((-(.....((((...))))...)))-------------)))))))).----.. ( -31.10)
>DroSim_CAF1 43167 93 + 1
UCUGGCGUCUG------AUCAUCCUUUAUCCUUUAUGGAUGCCACGCUGCCAUUGAUGGAGGAUG-AUAAUUGCGCUGAGCGCUCCUCA-------------UCCUCAUCC----UC
..((((((.((------..(((((............))))).)).)).))))..((((.((((((-(.....((((...))))...)))-------------)))))))).----.. ( -31.10)
>DroEre_CAF1 41524 93 + 1
UCUGGCGUCUGAUCCUGAUCAUCCUUUAUCCUUUAUGGAUGCCACGCUGCCAUUGAUGGAGGAUG-AUAAUUGUGCCGAGUGCUCCUC-------------------AGCC----UC
...((((.(.(((....(((((((((((((....((((..((...))..)))).)))))))))))-)).))))))))(((.(((....-------------------))))----)) ( -29.50)
>DroYak_CAF1 41733 111 + 1
UCUGGCGUCUGAUCCUGAUCAUCCUUUAUUCUUUAUGGAUGCCACGCUGCCAUUGAUGGAGGAUG-AUAAUUGUGCCGAGCGCUCCUCAGCCUCCUCAGCC-UCCUCAGCC----UC
...(((....((..((((((((((((((((....((((..((...))..)))).)))))))))))-)..........(((.(((....)))))).))))..-))....)))----.. ( -32.60)
>DroAna_CAF1 42570 111 + 1
UCUGGCGUCUG------AUUAUCCUUGAUCCUUUAUGGCCGCCACGCAGUCAUUGAUGAAGGAUGGAUAAUUGCUCCGAGUGCUCCGAGUGCUCCACAGCCAUCGUCAUCUUGGCUC
...((.((..(------(((((((...((((((((((((.((...)).)))))....))))))))))))))))).))(((..(.....)..)))...(((((.........))))). ( -34.50)
>consensus
UCUGGCGUCUG______AUCAUCCUUUAUCCUUUAUGGAUGCCACGCUGCCAUUGAUGGAGGAUG_AUAAUUGCGCCGAGCGCUCCUCA_____________UCCUCAUCC____UC
...((((..((......(((((((((((((....((((..((...))..)))).))))))))))).))........))..))))................................. (-21.15 = -20.32 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:00 2006