| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,857,952 – 4,858,051 |
| Length | 99 |
| Max. P | 0.821825 |
| Location | 4,857,952 – 4,858,051 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 88.45 |
| Mean single sequence MFE | -21.37 |
| Consensus MFE | -16.88 |
| Energy contribution | -16.84 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4857952 99 - 27905053 UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAAA--AAAAGAAGUAAAAACAACAAAUCACCUUUUUUUUUUGACUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((........(((--((((((((.................)))))))))))..)))))))))).)))) ( -21.33) >DroSec_CAF1 38467 96 - 1 UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAA---AAAAGAAGUAAAAACAACAAAUCACCUUUU--CGUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((.....(((..---(((((....................)))))--..))).)))))))))).)))) ( -21.35) >DroSim_CAF1 40481 99 - 1 UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAAAAAAAAAGAAGUAAAAACAACAAAUCACCUUUU--CGUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((...(((.((((............................))))--.)))..)))))))))).)))) ( -19.39) >DroEre_CAF1 38759 84 - 1 UGUUGUUGUUUUGGUUGCAAGCAGCUGAGCUAAAGAA--------------AGAAGUAAAAACAAAAAAUCACCUUUU---UUUGGCUUUGGCUCAAUUGC .((((((((.......)).))))))((((((((((..--------------...........(((((((......)))---)))).))))))))))..... ( -21.24) >DroYak_CAF1 39309 91 - 1 UGUUUUUGUUAUGGUUGCAAGCAGCUGAGCUAAAGAAA----AAA---AGAAGAAGUAAAAACAACAAAUCACCUUUU---UUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((...----(((---(((((....................)))))---)))..)))))))))).)))) ( -23.55) >consensus UGUUUUUGUUUUGGUUGCAAGCAGCUGAGCUAAGGAAAGACAAAA___AAAAGAAGUAAAAACAACAAAUCACCUUUU___UUUGGCUUUGGCUCAAUUGC .....((((.......))))((((.((((((((((....................((....)).........((..........)))))))))))).)))) (-16.88 = -16.84 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:58 2006