Locus 169

Sequence ID 3R_DroMel_CAF1
Location 825,582 – 825,696
Length 114
Max. P 0.964836
window282

overview

Window 2

Location 825,582 – 825,696
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.30
Mean single sequence MFE -35.60
Consensus MFE -28.38
Energy contribution -28.22
Covariance contribution -0.16
Combinations/Pair 1.11
Mean z-score -2.27
Structure conservation index 0.80
SVM decision value 1.57
SVM RNA-class probability 0.964836
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 825582 114 + 27905053
GGCUGGUGUGGGGGA------AAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU
((((((.((..((((------((((((((((..((((((((...))))))))..))))))))))...((((.((((((.....))))))))))...))))..))..))))))........ ( -39.00)
>DroSec_CAF1 7873 120 + 1
GACUGGUGUGGGGGAAAAAGAAAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU
((((((.((..(((((.....((((((((((..((((((((...))))))))..))))))))))...((((.((((((.....))))))))))..)))))..))..))))))........ ( -40.60)
>DroSim_CAF1 5052 120 + 1
GACUGGCGUGGGGGAAAAAGAAAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU
(((((((.(((..(.......((((((((((..((((((((...))))))))..))))))))))...((((.((((((.....))))))))))..)..))).)))...))))........ ( -40.30)
>DroEre_CAF1 9560 113 + 1
GGA------AAGG-GAAGGGAAGGGGAAUGGGAAGUGGGUGCCCUGUCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU
..(------((((-(((((..((.(((..(((.........)))..))).))..))))))))))((.((.....(((((((...(((..((....))..))))))))))...)).))... ( -31.20)
>DroYak_CAF1 8370 108 + 1
GAA------AGGG------GAAAGGGAAUGGGAAGUGGGUGACCUGUCCGCUGACUUUUCCUUUGUGACUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU
...------((((------((((((..(..(((...((....))..)))..)..))))))))))((.((.....(((((((...(((..((....))..))))))))))...)).))... ( -26.90)
>consensus
GACUGG_GUGGGGGAAA__GAAAGGGAAAGGGGAGUGGGUGCCUCGCCCGCUGACUUUUCCUUUGUGGCUUUAAUGAAAGUAAUUUAUUAAGUAAUUUCUAAGCUUUUAGUCGUGACGCU
.....................((((((((((..(((((((.....)))))))..))))))))))((.((.....(((((((.....................)))))))...)).))... (-28.38 = -28.22 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:42 2006