| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,836,532 – 4,836,638 |
| Length | 106 |
| Max. P | 0.532776 |
| Location | 4,836,532 – 4,836,638 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.40 |
| Mean single sequence MFE | -40.52 |
| Consensus MFE | -24.13 |
| Energy contribution | -24.93 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4836532 106 + 27905053 CUCUCCUGGCGGCGGACGU---CCGCUGCGCCUCUCGAUGCCUCUAUCAGCUGUUGGCUUAGUGCCAGCUCCACU---AGCACCACCACCAGGGGCUGCAGUUGCUCCAGCU .....((((.(((((....---))(((((((((((.((((....)))).(((((((((.....))))))......---))).........)))))).))))).))))))).. ( -38.50) >DroPse_CAF1 23030 103 + 1 CUCUGGUGGUGGCGGACGG---C---CGCGUCUUUCGAUGCCUCUGUCAGCUGUUGGCUUACUGCCAGCUCCACC---AACCGCACCCCCAGUAGCUGCAUUUGCUCCGGCU ..((((.((((.(((((((---.---.(((((....)))))..))))).(..((((((.....))))))..)...---...)))))).)))).((((((....))...)))) ( -40.20) >DroSec_CAF1 17410 97 + 1 CUCUCCUGGCGGCGGACGU---CCGCUGCGCCUCUCGAUGCCUCUAUCAGCUGUUGGCUUAGUGCCAGCUCCA------------CCACCUGGGGCUGCAGUUGCUCCUGCU ........(((((((....---)))))))(((((..((((....)))).(..((((((.....))))))..).------------......))))).((((......)))). ( -38.00) >DroSim_CAF1 19001 106 + 1 CUCUCCUGGCGGCGGACGU---CCGCUGCGCCUCUCGAUGCCUCUAUCAGCUGUUGGCUUAGUGCCAGCUCCACC---AGCACCACCACCUGGGGCUGCAGUUGCUCCUGCU ........(((((((....---)))))))(((((..((((....)))).(((((((((.....))))))......---)))..........))))).((((......)))). ( -38.90) >DroAna_CAF1 17353 112 + 1 UUCUGCCGGCGGUGGCCGUCCUCCGCCGCGCCUCUCUAUGCCUCUAUCAGCCGAUGGCUUGUUGCCAGCUCCGCCGGUAGUCCCACCACCCGGAGCUGCAGCGGCUCCUGAU ....((((((((.((....)).)))))).))...((...(((.(((((....)))))...(((((.(((((((..(((......)))...)))))))))))))))....)). ( -47.30) >DroPer_CAF1 23793 103 + 1 CUCUGGUGGUGGCGGACGG---C---CGCGUCUUUCGAUGCCUCUGUCAGCUGUUGGCUUACUGCCAGCUCCACC---AACCGCACCCCCAGUAGCUGCAUUUGCUCCGGCU ..((((.((((.(((((((---.---.(((((....)))))..))))).(..((((((.....))))))..)...---...)))))).)))).((((((....))...)))) ( -40.20) >consensus CUCUCCUGGCGGCGGACGU___CCGCCGCGCCUCUCGAUGCCUCUAUCAGCUGUUGGCUUAGUGCCAGCUCCACC___AGCCCCACCACCAGGAGCUGCAGUUGCUCCUGCU ........(((((((.......))))))).......((((....))))(((.((((((.....))))))......................(((((.......))))).))) (-24.13 = -24.93 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:55 2006