| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,832,566 – 4,832,662 |
| Length | 96 |
| Max. P | 0.699996 |
| Location | 4,832,566 – 4,832,662 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 83.54 |
| Mean single sequence MFE | -43.68 |
| Consensus MFE | -32.67 |
| Energy contribution | -33.70 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4832566 96 + 27905053 GGAGCUGCCGGCAAAUGCGCCGGAGAUGGAUUCUUCGACGGCUGGAGCAUCCGGCAGUGCCAGAUCCGGAAGCAGCGGUAGUGGCUCUUCUGGCUC ((.((((((((...((((((((..((........))..))))....)))))))))))).)).((.(((((((.(((.......)))))))))).)) ( -44.50) >DroSec_CAF1 13445 96 + 1 GGAGCUGCCGGCAAAUGCGCCAGAGGUGGAUUCUUCAUCUGCUGGAGCAUCCGGCAGUACCAGAUCCGGAAGCAGCGGCAGUGGCUCUUCUGGCUC ((.((((((((...((((.(((((((((((...))))))).)))).)))))))))))).)).((.(((((((.(((.......)))))))))).)) ( -49.30) >DroSim_CAF1 13919 96 + 1 GGAGCUGCCGGCAAAUGCGCCAGAGGUGGAUUCUUCGUCGGUUGGAGCAUCCGGCAGUGCCAGAUCCGGAAGCAGCGGCAGUGGCUCUUCUGGCUC ((.((((((((...((((.((((.(..(((...)))..)..)))).)))))))))))).)).((.(((((((.(((.......)))))))))).)) ( -43.30) >DroEre_CAF1 13440 96 + 1 GGAGCUGCCGGCAAAUGCGCCGGAGAUGGGUUCGUCGGCAGCUGGAGCAUCCGGCAGUGCCAGAUCCGGAAGCAGCGGUAGUGGUUCUUCUGGCUC ((.((((((((...((((.((((.((((....)))).....)))).)))))))))))).)).((.(((((((.(((.......)))))))))).)) ( -42.90) >DroYak_CAF1 13555 96 + 1 GGAGCUGCCGGCAAAUGCGCCGGAGAUGGGUUCGUCGGCGGCUGGAGCAUCCGGCAGUGCCAGAUCUGGAAGCAGCGGUAGUGGCUCUUCUGGCUC ...((((((((......(((((..((.....))..)))))((....))..))))))))((((((...(((.((.((....)).))))))))))).. ( -43.40) >DroAna_CAF1 13190 90 + 1 GGAGCUACCGGCGAACGCGCCGGAAUCGGUUUCACCGGCAGCUGCCACCACAAGCGGUGGCCGAUCAGGCAGCAGCG------GAUCAACAGGAUC ...((..((((((....))))))...(((.....))))).(((((((((......))))(((.....))).))))).------((((.....)))) ( -38.70) >consensus GGAGCUGCCGGCAAAUGCGCCGGAGAUGGAUUCUUCGGCGGCUGGAGCAUCCGGCAGUGCCAGAUCCGGAAGCAGCGGUAGUGGCUCUUCUGGCUC ((.((((((((...((((.((((...(((.....)))....)))).)))))))))))).)).((.(((((((.(((.......)))))))))).)) (-32.67 = -33.70 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:53 2006