Locus 1681

Sequence ID 3R_DroMel_CAF1
Location 4,815,782 – 4,815,879
Length 97
Max. P 0.998318
window2776

overview

Window 6

Location 4,815,782 – 4,815,879
Length 97
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 91.12
Mean single sequence MFE -24.52
Consensus MFE -22.30
Energy contribution -21.50
Covariance contribution -0.80
Combinations/Pair 1.18
Mean z-score -2.14
Structure conservation index 0.91
SVM decision value 3.07
SVM RNA-class probability 0.998318
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4815782 97 + 27905053
ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUAAACAGCUCCA---CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU
............((((....((.....)).(((((((.....(((...---((.((((.......))))))..)))....)))))))))))......... ( -24.70)
>DroSec_CAF1 5303 97 + 1
ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUUAACAGCUCCA---CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU
............((((....((.....)).((((((((....(((...---((.((((.......))))))..)))...))))))))))))......... ( -24.30)
>DroSim_CAF1 6735 97 + 1
ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUUAACAGCUCCA---CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU
............((((....((.....)).((((((((....(((...---((.((((.......))))))..)))...))))))))))))......... ( -24.30)
>DroEre_CAF1 5153 100 + 1
ACAAGCAGAUCCCUAGUACCGCCAACAGCAGCGUUGUAAAAAGCUCCACAACGACAGCAGCUCCAGCUGCGACAGCGACGACAACGCCUGGUAACAAUCU
......((((......((((((.....)).(((((((.....((((......))..(((((....)))))....))....)))))))..))))...)))) ( -25.90)
>DroYak_CAF1 5137 100 + 1
ACAAAUCAAUCACUAGUACAGUCAACAGCAGCGUUGUAAACAGCUCCACAACGACAGCAGCUCCAGCUGCGACAGCGACGACAGCGCCUGGCAACAAUCU
............((((....(((.......(((((((..........)))))).).(((((....)))))))).(((.(....))))))))......... ( -23.40)
>consensus
ACAAGCAAAUCACUAGUACAGCAAACAGCAGCGUUGUAAACAGCUCCA___CGACAGCAUCUCCAGCUGCGACAGCGACGGCAACGCCUAGCAACAAUCU
............((((....((.....)).(((((((.....(((......((.((((.......))))))..)))....)))))))))))......... (-22.30 = -21.50 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:47 2006