Locus 1679

Sequence ID 3R_DroMel_CAF1
Location 4,807,577 – 4,807,669
Length 92
Max. P 0.917364
window2771

overview

Window 1

Location 4,807,577 – 4,807,669
Length 92
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 77.86
Mean single sequence MFE -24.03
Consensus MFE -13.35
Energy contribution -13.71
Covariance contribution 0.36
Combinations/Pair 1.09
Mean z-score -2.22
Structure conservation index 0.56
SVM decision value 1.11
SVM RNA-class probability 0.917364
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4807577 92 - 27905053
CAUAAACUAUCAGC---U---------CGACUGGAUUUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCGGUGUACCGGGUGGGAAUCAUUCUACUGUCCA
..............---.---------.(((((((....(((((((......((((((..(((....))).))))))...)))))))......))))..))).. ( -23.70)
>DroPse_CAF1 2908 99 - 1
CA----UUAUUAACAUAUAGAGGUAUACAAGUAUA-UAACAUACCCACAAACAUAUCGCCCACGUGAGUGUCCGUAUAUCUGGUGGGAAUCAUUCUACUGUCCA
..----...........((((((((((....))))-)......(((((....((((((..(((....)))..)).))))...))))).....)))))....... ( -22.90)
>DroEre_CAF1 940 92 - 1
CAUAUAUUAUCUAC---G---------CAACUGGAGUUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCGGUGUACCGGGUGGGAAUCAUUCUACUGUCCA
..............---(---------((..((((((..(((((((......((((((..(((....))).))))))...)))))))....)))))).)))... ( -23.90)
>DroYak_CAF1 869 92 - 1
CAUAAAUUAUCUAC---U---------CGACUAGAGUUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCGGUGUACCGGGUGGGAAUCAUUCUACUGUCCA
..............---.---------.(((((((((..(((((((......((((((..(((....))).))))))...)))))))....))))))..))).. ( -25.80)
>DroAna_CAF1 1053 92 - 1
UAUAUAUAA-CAAC---UA--------UGACUUCAUAGACUUACCCACAAACAUGUCACCCACAUGGGUAUCCGUGUAGCGGGUGGGAAUCAUUCUACUGUCCA
.........-...(---((--------((....))))).(((((((.(..(((((..((((....))))...))))).).)))))))................. ( -25.00)
>DroPer_CAF1 1114 99 - 1
CA----UUAUUAACAUAUAGAGGUAUACAAGUAUA-UAACAUACCCACAAACAUAUCGCCCACGUGAGUGUCCGUAUAUCUGGUGGGAAUCAUUCUACUGUCCA
..----...........((((((((((....))))-)......(((((....((((((..(((....)))..)).))))...))))).....)))))....... ( -22.90)
>consensus
CAUA_AUUAUCAAC___U_________CAACUAGA_UUACUCACCCACAAACAUAUCGCCCACGUGAGUGUCCGUGUACCGGGUGGGAAUCAUUCUACUGUCCA
...........................................(((((........(((.(((....)))...)))......)))))................. (-13.35 = -13.71 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:43 2006