| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,806,205 – 4,806,325 |
| Length | 120 |
| Max. P | 0.579767 |
| Location | 4,806,205 – 4,806,325 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.83 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -19.48 |
| Energy contribution | -19.88 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4806205 120 - 27905053 UUUGCUGUCAUCGCAGAAACAAGAGAAAUAAUAUAAUAUUGCCCACCCACAAUUAAAGGCACUCCCCUCCCAAAAUGUUCACCCAGUAAAUAUUGUUGUGGGUAGCGCAAAUCGAUGGCU ......(((((((..........(....).........(((((.(((((((((...(((......))).....((((((.((...)).))))))))))))))).).))))..))))))). ( -26.50) >DroSec_CAF1 41497 120 - 1 UUUGCGGUCAUCACAGAAAUAAGAGAAAUAAUAUUAUAUUGCCCACCCACAAUUGAAGGCACUCCCCUCUCAAAAUGUUCACCCAGUAAAUAUUGUUGGGGGGAGCGCAAAUCGAUGGCU .....(((((((.....((((..(....)..))))...................((..((.((((((((....((((((.((...)).))))))...)))))))).))...))))))))) ( -31.00) >DroSim_CAF1 37711 120 - 1 UUUGCGGUCAUCACAGAAAUAAGAGAAAUAAUAAUAUAUUGCCCACCCACAAAUGAAGGCACUCCCUUCCCAAAAUGUUCACCCAGUAAAUAUUGUUGUGGGGAGCGCAAAUCGAUGGCU .....(((((((...........(....).........(((((..(((((((..(((((.....)))))....((((((.((...)).)))))).)))))))..).))))...))))))) ( -29.20) >DroEre_CAF1 42509 102 - 1 UUUGCCGCCAUCACAAAGAUAAGAGAAAUAAU------------------AAUUGAAGGCACUCCCUUCCCAAAAUGCUCUCCCAGUAAAUAUUAGUGUGGGGAGCGCAAAUCGAUGGCU ......((((((....................------------------....(((((.....))))).......(((((((((.((.....)).)).))))))).......)))))). ( -30.30) >DroYak_CAF1 43658 118 - 1 CUUGGUGUCAUCACAAAGAUAAGAGAAAUAAUAUAAUAUUCCCCACCCACAAUUAAAGGCUCUCCCUUCCCA--AUGAUUUCCCAGUGAAUAUUUUUGUGGGGAGCGCAAAUCGAUGGCU ......((((((......(((..(....)..)))....((((((((.........((((.....))))..((--.((......)).)).........))))))))........)))))). ( -22.00) >consensus UUUGCGGUCAUCACAGAAAUAAGAGAAAUAAUAUAAUAUUGCCCACCCACAAUUGAAGGCACUCCCUUCCCAAAAUGUUCACCCAGUAAAUAUUGUUGUGGGGAGCGCAAAUCGAUGGCU ......((((((...........(....).............................((.((((((......((((((.........)))))).....)))))).)).....)))))). (-19.48 = -19.88 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:40 2006