Locus 1675

Sequence ID 3R_DroMel_CAF1
Location 4,804,291 – 4,804,394
Length 103
Max. P 0.933942
window2764

overview

Window 4

Location 4,804,291 – 4,804,394
Length 103
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 86.11
Mean single sequence MFE -20.71
Consensus MFE -15.22
Energy contribution -15.82
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.41
Structure conservation index 0.73
SVM decision value 1.23
SVM RNA-class probability 0.933942
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4804291 103 + 27905053
UU-----UCUCUUUUUCGUUUGCCUUACAGUGAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGAUGUACCCACGCUUCUCCCCACCACUCCCCCAACU
..-----..........((.((...(((((((((....))))).(((((((...............))))))).))))..)).))....................... ( -16.36)
>DroSec_CAF1 39514 103 + 1
UU-----UCUCUUUUUCGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGGCUGCUGUACCCACGCUUCCUCCCCAGAACCCCCCAGCC
..-----..........((.(((..(((((((..(...((.(((.(((((....)))))))).))...)..))))))).))).))....................... ( -18.60)
>DroSim_CAF1 35696 103 + 1
UU-----UCUCUUUUUCGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCUGUACCCACGCUUCCUCCCCAGAAUCCCCCAACU
..-----...........(((((...(((((....)))))...((((((((...............))))))))..................)))))........... ( -19.16)
>DroEre_CAF1 40513 103 + 1
UUUUGUUUUUCUUUUUGGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCUGUACCCACGCUGCUUGCCA----UC-CACAACU
...............(((..((((...((((.......((((.((((((((...............)))))))))).))....))))...))))----.)-))..... ( -27.46)
>DroYak_CAF1 41712 100 + 1
UUUU---CUUCUUUUUAGUUUGGCCUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCCGUACCCACGCUUCUUGCCA----UC-CGCAACU
....---..........(..((((..(((((....)))))...((((((((...............))))))))................))))----..-)...... ( -21.96)
>consensus
UU_____UCUCUUUUUCGUUUGGCUUACAGUAAUCAUUGUCAUGCAGGCGAUUCUGCUUCAUUAUUUCGCCUGCUGUACCCACGCUUCUUCCCA__A_UCCCCCAACU
.................((.(((...(((((....)))))...((((((((...............)))))))).....))).))....................... (-15.22 = -15.82 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:36 2006