Locus 1672

Sequence ID 3R_DroMel_CAF1
Location 4,800,091 – 4,800,192
Length 101
Max. P 0.912571
window2760

overview

Window 0

Location 4,800,091 – 4,800,192
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 97.03
Mean single sequence MFE -23.56
Consensus MFE -22.30
Energy contribution -23.34
Covariance contribution 1.04
Combinations/Pair 1.03
Mean z-score -1.40
Structure conservation index 0.95
SVM decision value 1.08
SVM RNA-class probability 0.912571
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4800091 101 - 27905053
UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA
....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... ( -26.40)
>DroSec_CAF1 35511 101 - 1
UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA
....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... ( -26.40)
>DroSim_CAF1 31613 101 - 1
UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA
....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... ( -26.40)
>DroEre_CAF1 36333 101 - 1
UCGAGGAAUAUAGACUCAGGCUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAAAUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA
..(((.........))).((((.(((.....((((....((((((.......)))))))))).....)))))))........................... ( -15.80)
>DroYak_CAF1 36623 101 - 1
UCGAGGAAUAUAGCCUCAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAAAUAUUUUGGGCGGCCGCACUUUAUGAUUGGCAAUUAAAAAUA
....((((((.((((..(((((((..........)))))))..)))).))))))........((((((...((((..(.....)..))))..))))))... ( -22.80)
>consensus
UCGAGGAAUAUAGCCAGAGGUUUGUCAUGCUUAUUAAACUUUUGGUUCUGUUCCAAAAACUAUUUUGGGCGGCCGCACUUUAUGAUUGGUAAUUAAAAAUA
....((((((.(((((((((((((..........))))))))))))).))))))........((((((...((((..(.....)..))))..))))))... (-22.30 = -23.34 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:31 2006