Locus 1670

Sequence ID 3R_DroMel_CAF1
Location 4,797,164 – 4,797,267
Length 103
Max. P 0.781058
window2757

overview

Window 7

Location 4,797,164 – 4,797,267
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.63
Mean single sequence MFE -31.58
Consensus MFE -24.06
Energy contribution -24.45
Covariance contribution 0.39
Combinations/Pair 1.15
Mean z-score -2.00
Structure conservation index 0.76
SVM decision value 0.56
SVM RNA-class probability 0.781058
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4797164 103 - 27905053
-------------UUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGUACGAGGAGUUUCCCAAUUGGGGUUUUAUC----UUAAAGUGAAAGCAAAGGAAGACAUUAGGCAGCGGA
-------------(((((.(((.((((..((((((((((((.(((((.....))))))))))))).)))).(.((((((.----.....)))))).)........)))).))).))))). ( -29.70)
>DroSec_CAF1 32590 103 - 1
-------------UCGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAAUUGGGGGUUUUUC----UUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA
-------------(((((..((((.....((((((((((((.(((((.....))))))))))))).))))...(((((((----((...((....)).)))))))))..)))).))))). ( -34.50)
>DroSim_CAF1 28655 103 - 1
-------------UCGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAAUUGGGGGUUUUUC----UUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA
-------------(((((..((((.....((((((((((((.(((((.....))))))))))))).))))...(((((((----((...((....)).)))))))))..)))).))))). ( -34.50)
>DroEre_CAF1 33269 104 - 1
-----------UUUUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAGUUGGG-GUUUUUC----GUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA
-----------.((((((..............(((((((((.(((((.....))))))))))))))(((.((-(((((((----.....((....))...))))))).)).))))))))) ( -32.10)
>DroYak_CAF1 33670 104 - 1
-----------UUUUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAGUUGGG-GUUUUUC----GUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA
-----------.((((((..............(((((((((.(((((.....))))))))))))))(((.((-(((((((----.....((....))...))))))).)).))))))))) ( -32.10)
>DroAna_CAF1 32218 116 - 1
GUAUUUAUUUCUUUUUCUUUUUUGGGUGAGAUGGGGAAAUUUUCUUA--GCUCGAGGAGUUUCCCAGUGGGA-UUUUUUUACAUGUUAAGUGAAAGCACAGGAUGUGAUUUGU-UGGGGA
......(((((((..((((........))))..))))))).((((((--((...(((((..((((...))))-..))))).((((((..(((....)))..))))))....))-)))))) ( -26.60)
>consensus
_____________UUGCUUUUUCAUGUGGCGAUGGGAAAUUUCCUUGGGGCACGAGGAGUUUCCCAAUUGGG_GUUUUUC____GUAAAGUGAAAGCAAAGGAAGACAUUGGGCAGCGGA
.............(((((.((..((((.....(((((((((.(((((.....)))))))))))))).......................((....))........))))..)).))))). (-24.06 = -24.45 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:28 2006