Locus 1667

Sequence ID 3R_DroMel_CAF1
Location 4,795,744 – 4,795,845
Length 101
Max. P 0.639949
window2752

overview

Window 2

Location 4,795,744 – 4,795,845
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 91.10
Mean single sequence MFE -24.64
Consensus MFE -18.05
Energy contribution -18.33
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.91
Structure conservation index 0.73
SVM decision value 0.22
SVM RNA-class probability 0.639949
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4795744 101 + 27905053
AUAU-----AUAC-CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAUGUGCGUAGUUAUUUAUUU
....-----.(((-((((.....))))..(((((.((((....((((((((((.................))))))))))....))))))))))))........... ( -23.53)
>DroSec_CAF1 31111 102 + 1
AUAU-----AUACGCGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAGGUGCGUAUUUAUUUAUUU
(((.-----(((((((((.....))))).((((..((((....((((((((((.................))))))))))....)))).)))))))).)))...... ( -29.13)
>DroSim_CAF1 27168 101 + 1
AUAU-----AUAC-CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUGCAUCCUGCUUCCUUAAAAUGCCGAUUAUUAUUUAGGUGCGUAUUUAUUUAUUU
(((.-----.(((-((((......((((......)))).))).((((((((..((.....))..........))))))))........))))..))).......... ( -21.20)
>DroEre_CAF1 31791 101 + 1
GUAC-----AUAC-CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAGUUGCGUUUUUAUUUCAUU
....-----....-(((....))).((((((....((....))((((((((((.................))))))))))........))))))............. ( -23.53)
>DroYak_CAF1 32211 106 + 1
AUAUACUUUAUAC-CGGUAUGCCGCUGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUACUAAUUAGUUGUGAAUUUAUUUCUUU
......((((((.-((((...((((((.....)))))).))).((((((((((.................))))))))))........).))))))........... ( -25.83)
>consensus
AUAU_____AUAC_CGGUAUACCGCCGCAGCACAGUGGAACCAAAUUGGCAGUACAUCCUGCUUCCUUAAACUGCCGAUUAUUAUUUAGGUGCGUAUUUAUUUAUUU
..............((((.....))))..((((..((....))((((((((((.................)))))))))).........)))).............. (-18.05 = -18.33 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:22 2006