Locus 1666

Sequence ID 3R_DroMel_CAF1
Location 4,795,238 – 4,795,331
Length 93
Max. P 0.573248
window2751

overview

Window 1

Location 4,795,238 – 4,795,331
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.34
Mean single sequence MFE -31.04
Consensus MFE -25.17
Energy contribution -25.61
Covariance contribution 0.45
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 0.08
SVM RNA-class probability 0.573248
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4795238 93 + 27905053
CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG
.............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30)
>DroSec_CAF1 30601 93 + 1
CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG
.............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30)
>DroSim_CAF1 26650 93 + 1
CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG
.............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30)
>DroEre_CAF1 31288 93 + 1
CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCACCUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG
.............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30)
>DroYak_CAF1 31710 93 + 1
CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG---------------------------CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG
.............((((((((((((((((((((..(((.(((((...---------------------------.))))).)))........)))))))))))(....).))))))))). ( -31.30)
>DroAna_CAF1 30437 117 + 1
CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAGCAACGGCGACUUCGGCAGCGGCAUCGGCGGCGGCGUCCCAUCUUUUUAUGUGGAGUUUCAGAAGGAGUCG---
.................(((...(((...............))).)))..((((..((((.((.((.((....)).)).)).((((((......))).)))......))))..))))--- ( -29.76)
>consensus
CUUUCGCAUAUAAUUCAGCUUUGGGCUACAUAAUUAAUUCCGCCAAG___________________________CGGCGGCGUUCCAACUUUUUAUGUGGCUCCCAAGGAGGAGCUGGAG
.............((((((((((((((((((((..(((.(((((...............................))))).)))........)))))))))))(....).))))))))). (-25.17 = -25.61 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:21 2006