Locus 1664

Sequence ID 3R_DroMel_CAF1
Location 4,794,214 – 4,794,313
Length 99
Max. P 0.978649
window2748

overview

Window 8

Location 4,794,214 – 4,794,313
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 89.54
Mean single sequence MFE -23.92
Consensus MFE -18.26
Energy contribution -19.58
Covariance contribution 1.32
Combinations/Pair 1.16
Mean z-score -2.74
Structure conservation index 0.76
SVM decision value 1.82
SVM RNA-class probability 0.978649
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4794214 99 + 27905053
CUAAAGAUUUUAGCUAGCUUUC-CACACAGAAAGGUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCUUAAAGGCCCAUCUGAAUCUUU
..(((((((.....((.(((((-......))))).))..(((((...)))))((((((..((((((....(....)....)))))).))))))))))))) ( -23.80)
>DroSec_CAF1 29604 99 + 1
CCAAGGAUUUUAGCUAGCUUUC-CACACAGAAAGUUAAAUGCAUAAAGUGCACAGAUGUUGCCUUUCUUUCAUCAGUCUUAAAGGCGCAUCUGAAUCUUU
..(((((((.....((((((((-......))))))))..(((((...)))))(((((((.((((((....(....)....)))))))))))))))))))) ( -28.30)
>DroSim_CAF1 25636 97 + 1
CCGAAGAUUUUAGCUAACUUU--CACACAGAAAGUUAAAUGCAAAAAGUGCACAGA-GUAGCCUUUCUUUCAUCAGUCUUAAAGGCGCAUCUGAAUCUUU
..(((((((.....(((((((--(.....))))))))..((((.....))))((((-...((((((....(....)....))))))...))))))))))) ( -25.00)
>DroEre_CAF1 30175 99 + 1
GUACA-AUAAUUGCAAGCUUUCCCACACAGAAAGCUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCUUAAAAGCGCAUCUGAAUCUUU
((((.-.....(((((((((((.......)))))))...))))....)))).(((((((.((.(((....(....)....))).)))))))))....... ( -23.40)
>DroYak_CAF1 30569 99 + 1
CUAGAGAUAUUUGCUAGCUUUC-CACCCAGAAAGUUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCGCAAAAGCCCAUCUGAAUCUUU
...(..(((((((.((((((((-......))))))))..(((((...))))))))))))..)..........((((..((....))....))))...... ( -19.10)
>consensus
CUAAAGAUUUUAGCUAGCUUUC_CACACAGAAAGUUAAAUGCAUAAAGUGCACAGAUGUAGCCUUUCUUUCAUCAGUCUUAAAGGCGCAUCUGAAUCUUU
..((((((......((((((((.......))))))))..((((.....))))(((((((.((((((....(....)....))))))))))))).)))))) (-18.26 = -19.58 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:18 2006