| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,791,287 – 4,791,382 |
| Length | 95 |
| Max. P | 0.916651 |
| Location | 4,791,287 – 4,791,382 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.67 |
| Mean single sequence MFE | -25.04 |
| Consensus MFE | -15.29 |
| Energy contribution | -16.07 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4791287 95 + 27905053 AUUUGUGCAUUUGUCAGAA---------GAUUCAGCUUCAGUGCCCC----------U------CACACGCAUUUGGGUUAGACAAACUGAACCCAAAAUAAAUGCGCCCAAAACAAAAU ....((((((((((..(((---------(......)))).(((....----------.------..)))...((((((((((.....))).)))))))))))))))))............ ( -24.40) >DroSec_CAF1 26588 95 + 1 AUUUGUGCAUUUGUCAGAA---------GAUUCGGCUUCAGUGCCCC----------U------CACACGAAUUUGGGUUAGACAAACUGAACCCAAAAUAAAUGCGCCCAAAACAAAAU ....((((((((((.....---------((...(((......)))..----------)------).......((((((((((.....))).)))))))))))))))))............ ( -24.80) >DroSim_CAF1 22070 95 + 1 AUUUGUGCAUUUGUCAGUA---------GAUUCGGCUUCAGUGCCCC----------U------CACACGCAUUUGGGUUAGACAAACUGAACACAAAAUAAAUGCGCCCAAAACAAAAU ....((((((((((((((.---------..((..(((..(((((...----------.------.....)))))..)))..))...)))))........)))))))))............ ( -21.20) >DroEre_CAF1 26905 95 + 1 AUUUGUGCAUUUGUCAGGG---------GAUUCAGCUUCAGUGCUCC----------U------CACACACAUUUGGGUUAGGCAAACUGAACCUAUAUUAAAUGCGCCCAAAACAAAAU ....(((((((((....((---------(.(((((......((((.(----------(------((........))))...))))..))))))))....)))))))))............ ( -24.10) >DroYak_CAF1 27294 111 + 1 AUUUGUGCAUUUGUCAGGA---------GAAUCAGCUUCAGUGCUUCAGUGCUUCCCUCACAUACACACACAUUUGGGUUAGACAAACUGAACCGAAAAUAAAUGCGCCGAAAACAAAAU ....((((((((((..((.---------.....(((......)))(((((.((.(((..................)))..))....))))).))....))))))))))............ ( -24.27) >DroAna_CAF1 25734 110 + 1 GUUUGUGCAUUUGUCAGGGGCCAUCUGGGAUGCUGCUCCGCUCCCCA----------GCAAACCCAAACACAUUUGGGUUAGACAAACUCAGUCAAAAAUAAACGCACCCGAAACAAAAU .........(((((..(((((...(((((..((......))..))))----------)..((((((((....)))))))).(((.......)))..........)).)))...))))).. ( -31.50) >consensus AUUUGUGCAUUUGUCAGGA_________GAUUCAGCUUCAGUGCCCC__________U______CACACACAUUUGGGUUAGACAAACUGAACCCAAAAUAAAUGCGCCCAAAACAAAAU ....((((((((((...................(((......)))...........................((((((((((.....)).))))))))))))))))))............ (-15.29 = -16.07 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:11 2006