Locus 1657

Sequence ID 3R_DroMel_CAF1
Location 4,787,498 – 4,787,615
Length 117
Max. P 0.808175
window2735

overview

Window 5

Location 4,787,498 – 4,787,615
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.16
Mean single sequence MFE -29.30
Consensus MFE -27.88
Energy contribution -27.35
Covariance contribution -0.52
Combinations/Pair 1.14
Mean z-score -0.99
Structure conservation index 0.95
SVM decision value 0.64
SVM RNA-class probability 0.808175
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4787498 117 + 27905053
UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGAUUUG---
....((((....(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).)))))...)))).....--- ( -28.50)
>DroSec_CAF1 22791 117 + 1
UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG---
....(((((...(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).))))).......)))))--- ( -29.00)
>DroSim_CAF1 18258 117 + 1
UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG---
....(((((...(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).))))).......)))))--- ( -29.00)
>DroEre_CAF1 23013 117 + 1
UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG---
....(((((...(((....)))((((((((((((......((((....(((..(((((..(((((.......))))).)))))..)))))))))))))).))))).......)))))--- ( -29.00)
>DroYak_CAF1 23447 117 + 1
UAUACGAACAUAUCGGAAACGAAUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAACUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG---
..((..((((..(((....)))..((((.(((......))).))))..))))..)).....(((((((((...((((((......(((....)))......))))))))))))))).--- ( -29.90)
>DroAna_CAF1 22230 120 + 1
UAUGCGAACAAAUCGGAAACGAAUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAAAAUUGAGAAUAUUCUUCUGAUCCGCGGGGCCGUUGACUUGAGGAAUUUCGGUAUGUGA
(((((((((((((((....)......((.(((......))))).)))))))))...............(((.(((((((...((.(((....))).))...)))))))))).)))))... ( -30.40)
>consensus
UAUACGAACAUAUCGGAAACGAUUUCGGUCAAUGACUUUUGCCUGAUUUGUUUAUAAGCCAGAAUUGAGAAUAUUCUUCUUAUUUGCGGGGCCGUUGACUUGAGGAAUUUCGGUUUG___
..((..((((..(((....)))..((((.(((......))).))))..))))..)).....(((((((((...((((((...((.(((....))).))...))))))))))))))).... (-27.88 = -27.35 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:06 2006