| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,783,173 – 4,783,263 |
| Length | 90 |
| Max. P | 0.994355 |
| Location | 4,783,173 – 4,783,263 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 97.04 |
| Mean single sequence MFE | -30.57 |
| Consensus MFE | -30.44 |
| Energy contribution | -30.33 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.42 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.47 |
| SVM RNA-class probability | 0.994355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4783173 90 + 27905053 CGGACCCGAAAAUGAAAAGAAAAAUCAGGUCGGCAUUGGUGUUUUUCGCGGGGCUGCCACAAGGCGGAUAGCUGGAAAAAGCGAAUGAAA .....((((...(((.........)))..))))((((.((.((((((((....(((((....)))))...)).)))))).)).))))... ( -26.00) >DroEre_CAF1 18646 90 + 1 CGGACCCGAAAAUGAAAAGAAAAAUCAGGUCGGCAUUGGUGUUUUCCGCGGGGCUGCUACAAGGCGGAUCGCUGGAAAAAGCGAAUGAAA .....((((...(((.........)))..))))((((.((.((((((((((..(((((....))))).)))).)))))).)).))))... ( -29.90) >DroYak_CAF1 18913 90 + 1 CGGACCCGAAAAUGAAAAGAAAAAUCAGGUCGGCAUUGGUGUUUUCCGCGGGGCUGCCGCAAGGCGGAUCGCUGGAAAAAGCGAAUGAAA .....((((...(((.........)))..))))((((.((.((((((((((..(((((....))))).)))).)))))).)).))))... ( -35.80) >consensus CGGACCCGAAAAUGAAAAGAAAAAUCAGGUCGGCAUUGGUGUUUUCCGCGGGGCUGCCACAAGGCGGAUCGCUGGAAAAAGCGAAUGAAA .....((((...(((.........)))..))))((((.((.((((((((((..(((((....))))).)))).)))))).)).))))... (-30.44 = -30.33 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:55 2006