Locus 1651

Sequence ID 3R_DroMel_CAF1
Location 4,783,035 – 4,783,133
Length 98
Max. P 0.921704
window2723

overview

Window 3

Location 4,783,035 – 4,783,133
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -27.22
Consensus MFE -25.77
Energy contribution -25.94
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.95
SVM decision value 1.14
SVM RNA-class probability 0.921704
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4783035 98 - 27905053
GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU----------------------
((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52)
>DroSec_CAF1 18325 98 - 1
GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU----------------------
((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52)
>DroSim_CAF1 13771 98 - 1
GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU----------------------
((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52)
>DroEre_CAF1 18511 98 - 1
GGCCAAAACGUUUUGACCUUUGACGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU----------------------
((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52)
>DroYak_CAF1 18775 98 - 1
GGCCAAAACGUUUUGACCUUUGACGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU----------------------
((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))...........---------------------- ( -26.52)
>DroAna_CAF1 18178 120 - 1
GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGCCCAAUUUCCGUUCGAGUUUUAGGUUUUUCUUCUUCAUUUUUA
(((((((((((((.((((..(((....)))..).))).))))..(..(((((((((((...(((......)))......)))))))))))..)))))).))))................. ( -30.70)
>consensus
GGCCAAAACGUUUUGACCUUUGCCGCCGCAUCGUGUUCGAACAUUUAAACGGAAGUUGAUUGCCGCCAAAGGUUAAGACCAAUUUCCGUUCGAGUUUU______________________
((.......(((((((((((((..((.(((((((((....))))...(((....))))).))).)))))))))))))))......))................................. (-25.77 = -25.94 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:54 2006