Locus 1650

Sequence ID 3R_DroMel_CAF1
Location 4,782,895 – 4,783,015
Length 120
Max. P 0.999929
window2722

overview

Window 2

Location 4,782,895 – 4,783,015
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.28
Mean single sequence MFE -39.60
Consensus MFE -36.55
Energy contribution -37.00
Covariance contribution 0.45
Combinations/Pair 1.11
Mean z-score -3.46
Structure conservation index 0.92
SVM decision value 4.62
SVM RNA-class probability 0.999929
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4782895 120 - 27905053
AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU
.....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.60)
>DroSec_CAF1 18185 120 - 1
AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU
.....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.60)
>DroSim_CAF1 13631 120 - 1
AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCAGUUAGAUGGUUAAGUAAGUU
.....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.70)
>DroEre_CAF1 18371 120 - 1
AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU
.....(((((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))))........... ( -40.60)
>DroYak_CAF1 18635 120 - 1
AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUCGUUAAGUAAGUU
.......(((((((..(((((((.(((..((..((.((.((((((.((((...(((.....))))))))))))).)).))..))..)))..)))))))..)))))))............. ( -34.40)
>DroAna_CAF1 18023 115 - 1
AAUUUUCG-----UCAGCAGCUGUUGUUCGGGCCGGGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCCCGGGUCAGACACUUAGUUGCCUGUUAGAUGGUUAAAUAAGAU
(((..((.-----.(((((((((.(((..((.((((((.((((((.((((...(((.....))))))))))))).)))))).))..)))..)))))).)))...))..)))......... ( -40.70)
>consensus
AAUUUCCAUCUGAUCAGCAGCUGUUGUUCGGUUCGUGUUGUUGAUGCAGUUUAGAGUUCAUUUCGCUGGUCAAUUGCUUGGGUCAGACAUUUAGUUGCCUGUUAGAUGGUUAAGUAAGUU
.....(((((((((..(((((((.(((..(..(((.((.((((((.((((...(((.....))))))))))))).)).)))..)..)))..)))))))..)))))))))........... (-36.55 = -37.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:53 2006