| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 823,079 – 823,174 |
| Length | 95 |
| Max. P | 0.993228 |
| Location | 823,079 – 823,174 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 72.00 |
| Mean single sequence MFE | -21.58 |
| Consensus MFE | -14.85 |
| Energy contribution | -16.60 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.69 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 823079 95 - 27905053 CUUAUAUGUGCGGAACAACUUUUGAUUUGUUUGUAUGUAAUUUGUAUACCCUUGCUGAGUGCAUAUUGAUUUCACUCUUAGUUUGCCACUCAGUU------ ....((((((((.(((((........)))))))))))))..............((((((((((.(((((........))))).)).)))))))).------ ( -22.00) >DroSec_CAF1 5467 90 - 1 ---AUAUGUGACGAACAACCUUUGAAACUUUGGUAUGUA-UUUGUAUACCCUUGCAGAGUGCAUAUUGGCUUUAGUCAGAGUUUGCCACUUA-UU------ ---....(((.(((((....(((((....(..(((((((-((((((......)))))).)))))))..)......)))))))))).)))...-..------ ( -22.20) >DroSim_CAF1 2647 88 - 1 ---UUGUUCGUC--ACAACCUUUGAAACUUUGGUAUGUA-UUUGUAUACCCUUGCAGAGUGCAUAUUGACUUCAGUCAGAGUUUGCCACUAU-UU------ ---......((.--.(((.((((((....(..(((((((-((((((......)))))).)))))))..)......)))))).)))..))...-..------ ( -21.20) >DroYak_CAF1 5797 92 - 1 --------UGUAAAUAAACCUUUGAUAUGUUGGUAUGUA-UUUGUAUGCCCUUGCAGUGUGCAGACUAAUUUUAAUCAUAGGUUGCAACUUAGUAAAGGAG --------........(((((.((((..((((((.((((-((((((......))))).))))).))))))....)))).)))))................. ( -20.90) >consensus ___AUAUGUGUCGAACAACCUUUGAAACGUUGGUAUGUA_UUUGUAUACCCUUGCAGAGUGCAUAUUGACUUCAGUCAGAGUUUGCCACUUA_UU______ ...............(((.((((((...(((((((((((.((((((......)))))).))))))))))).....)))))).)))................ (-14.85 = -16.60 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:29 2006