Locus 1649

Sequence ID 3R_DroMel_CAF1
Location 4,782,457 – 4,782,574
Length 117
Max. P 0.658921
window2721

overview

Window 1

Location 4,782,457 – 4,782,574
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.25
Mean single sequence MFE -21.33
Consensus MFE -19.07
Energy contribution -19.27
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.21
Structure conservation index 0.89
SVM decision value 0.26
SVM RNA-class probability 0.658921
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4782457 117 - 27905053
AAUUUAAAAGAUAGCUGUCAGUUA--UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCAUCAUCAACACAUUAAACCGUAUAUAAAAA-CAGCUGAGCGAUCAUAAAAUCACUCGGCUG
.........(((.((((...((((--.......((....))........))))..)))))))...........................-((((((((.(((......))).)))))))) ( -22.66)
>DroSec_CAF1 17763 117 - 1
AAUUUAAUAGAUAGCUGUCAGUUA--UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCGUCAUCAACACAUUAAACCGUAUAUGAAAA-CAGCUGAGCGGUCAUAAAAUCACUCGGCUG
.........(((.((((...((((--.......((....))........))))..)))))))...........................-((((((((.(((......))).)))))))) ( -21.66)
>DroSim_CAF1 13183 119 - 1
AAUUUAAUAGAUAGCUGUCAGUUAUAUAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCGUCAUCAACACAUUAAACCGUAUAUGAAAA-CAGCUGAGCGGUCAUAAAAUCACUCGGCUG
.........(((.((((...((((.........((....))........))))..)))))))...........................-((((((((.(((......))).)))))))) ( -21.53)
>DroEre_CAF1 17982 117 - 1
AAUUUAAAAGUUAGCUGUCAGUUA--UAAUGAAGCCAUUGCCCGAAAUCUAACCCGAGCAUCAUCAACACAUUAAACGGGAUAUAAAAA-CAGCUGAGAGGUCAUAAAAUCACUCGACUG
........((((((((((...(((--(((((....)))..((((...........((......))...........)))).)))))..)-)))))(((.(((......))).))))))). ( -19.85)
>DroYak_CAF1 18171 118 - 1
AAUUUAAAAGAUAGCUGUCAGUUA--UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCAUCAUCAACACAUUAAACGGGAUAUAAAAAGCAGCUGAGAGGUCAUAAAAUCACUCGGCUG
.........(((.((((...((((--.......((....))........))))..)))))))............................((((((((.(((......))).)))))))) ( -20.96)
>consensus
AAUUUAAAAGAUAGCUGUCAGUUA__UAAUUAAGCCAUUGCCCGAAAUCUAACCCCAGCAUCAUCAACACAUUAAACCGUAUAUAAAAA_CAGCUGAGCGGUCAUAAAAUCACUCGGCUG
.........(((.((((...((((.........((....))........))))..)))))))............................((((((((.(((......))).)))))))) (-19.07 = -19.27 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006