| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,777,350 – 4,777,531 |
| Length | 181 |
| Max. P | 0.991540 |
| Location | 4,777,350 – 4,777,451 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 85.65 |
| Mean single sequence MFE | -18.98 |
| Consensus MFE | -15.25 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4777350 101 + 27905053 G-------UUACUAAUUAACAAGAAUUUUCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUCAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGCA (-------(((..............((((((.......))))))..((((((..(((((((((((((.....))))))..)))))))...)))))).......)))). ( -18.80) >DroSec_CAF1 12861 101 + 1 G-------UUGCUAAUUUACGAGAAUUUUCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGUA .-------.(((((((.(((.....((((((.......))))))..((((((..(((((((((((((.....))))))..)))))))...))))))))).)).))))) ( -20.90) >DroEre_CAF1 12987 108 + 1 GAUUAUAAUCACUAAAUAACAAGAAUGUUCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCACAGUAUGUAUAUGUAGUA ((((..((((((((((...(..(((((((....((....))....)))))))..)...))))))))))...)))).........((((((...........)))))). ( -19.80) >DroYak_CAF1 13155 99 + 1 GAGUAUAGACACUAAAUAACAAGAAUUUUCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCAUAGUAUGUA--------- ..........((((...........((((((.......))))))..........(((((((((((((.....))))))..)))))))...)))).....--------- ( -16.40) >consensus G_______UCACUAAAUAACAAGAAUUUUCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGUA .........................((((((.......))))))..((((((..(((((((((((((.....))))))..)))))))...))))))............ (-15.25 = -16.00 + 0.75)
| Location | 4,777,350 – 4,777,451 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 85.65 |
| Mean single sequence MFE | -17.73 |
| Consensus MFE | -14.09 |
| Energy contribution | -14.40 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.737849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4777350 101 - 27905053 UGCUAUAUAUACAUACUUUGCAGCUUUUCAAGUGAUUUGAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGAAAAUUCUUGUUAAUUAGUAA-------C (((((.....(((...((((..((((((..((((((.....))))))))))))..))))....(((((((.......)))))))...)))....))))).-------. ( -17.50) >DroSec_CAF1 12861 101 - 1 UACUAUAUAUACAUACUUUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGAAAAUUCUCGUAAAUUAGCAA-------C .................((((.((((((..((((((.....)))))))))))).(((......(((((((.......))))))).....)))....))))-------. ( -16.80) >DroEre_CAF1 12987 108 - 1 UACUACAUAUACAUACUGUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGAACAUUCUUGUUAUUUAGUGAUUAUAAUC ((((((((((.(((........((((((..((((((.....))))))))))))........(((....)))))))))))((((....))))...)))))......... ( -18.50) >DroYak_CAF1 13155 99 - 1 ---------UACAUACUAUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGAAAAUUCUUGUUAUUUAGUGUCUAUACUC ---------...((((((....((((((..((((((.....))))))))))))....((((..(((((((.......)))))))...))))...))))))........ ( -18.10) >consensus UACUAUAUAUACAUACUUUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGAAAAUUCUUGUUAAUUAGUAA_______C ..................(((.((((((..((((((.....))))))))))))....((((..(((((((.......)))))))...)))).....)))......... (-14.09 = -14.40 + 0.31)
| Location | 4,777,371 – 4,777,491 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.64 |
| Mean single sequence MFE | -24.68 |
| Consensus MFE | -23.45 |
| Energy contribution | -24.45 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4777371 120 + 27905053 UCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUCAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGCAUUCCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCC ........((((((((.....((((((((((((((((((.....))))))..))))))......(((((..............))))).))))))....))))))))............. ( -23.04) >DroSec_CAF1 12882 120 + 1 UCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGUAUUGCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCC ........((((((((.....((((((((((((((((((.....))))))..))))))......(((((((..........))))))).))))))....))))))))............. ( -27.00) >DroEre_CAF1 13015 120 + 1 UCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCACAGUAUGUAUAUGUAGUAUUGCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCC ........((((((((.....((((((((((((((((((.....))))))..))))))......(((((((..........))))))).))))))....))))))))............. ( -27.00) >DroYak_CAF1 13183 107 + 1 UCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCAUAGUAUGUA-------------AUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCC ........((((((.......)))))).........(((((((((.(.((((((((..(((..(((.....-------------....)))...)))..)))))))).).))))))))). ( -21.70) >consensus UCAUAUCACUUGAAAACAAUAUUUAAGGCUUUUAGUGAUUUGAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGUAUUGCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCC ........((((((((.....((((((((((((((((((.....))))))..))))))......(((((((..........))))))).))))))....))))))))............. (-23.45 = -24.45 + 1.00)
| Location | 4,777,371 – 4,777,491 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.64 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -23.74 |
| Energy contribution | -24.05 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.984154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4777371 120 - 27905053 GGAUUUAAAAACUCUUGAAAAUGUGCCUAAGUGUAUGGAAUGCUAUAUAUACAUACUUUGCAGCUUUUCAAGUGAUUUGAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGA ...........(.(((((((((.(((..((((((((((....))))))......)))).)))((((((..((((((.....))))))))))))..........))))))))).)...... ( -25.60) >DroSec_CAF1 12882 120 - 1 GGAUUUAAAAACUCUUGAAAAUGUGCCUAAGUGUAUGCAAUACUAUAUAUACAUACUUUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGA ...........(.(((((((((.(((....(((((((..........))))))).....)))((((((..((((((.....))))))))))))..........))))))))).)...... ( -24.40) >DroEre_CAF1 13015 120 - 1 GGAUUUAAAAACUCUUGAAAAUGUGCCUAAGUGUAUGCAAUACUACAUAUACAUACUGUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGA ...........(.((((((((((..(.((.(((((((........))))))).))..)..).((((((..((((((.....))))))))))))..........))))))))).)...... ( -27.70) >DroYak_CAF1 13183 107 - 1 GGAUUUAAAAACUCUUGAAAAUGUGCCUAAGUGUAU-------------UACAUACUAUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGA ...........(.(((((((((.(((...(((((..-------------...)))))..)))((((((..((((((.....))))))))))))..........))))))))).)...... ( -23.70) >consensus GGAUUUAAAAACUCUUGAAAAUGUGCCUAAGUGUAUGCAAUACUAUAUAUACAUACUUUGCAGCUUUUCAAGUGAUUUCAAAUCACUAAAAGCCUUAAAUAUUGUUUUCAAGUGAUAUGA ...........(.(((((((((.(((....(((((((..........))))))).....)))((((((..((((((.....))))))))))))..........))))))))).)...... (-23.74 = -24.05 + 0.31)
| Location | 4,777,411 – 4,777,531 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.14 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -21.02 |
| Energy contribution | -22.27 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4777411 120 + 27905053 UCAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGCAUUCCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCCUAGAGAAUUUUGUGGCUUUCACCACUUUUGAAACCCGACC (((((.....(((((.((..(((((((((..............)))))..........((((((.((..((....))..)).))))))))))..))))))).....)))))......... ( -21.74) >DroSec_CAF1 12922 120 + 1 UGAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGUAUUGCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCCUAGAGACUUCGGUGGCUCUACCCACUUUUGAAACCCGACC ........((((((((..(((...(((((((..........)))))))......)))..))))))))((((((((.....))))))))((((.(..((...........))..))))).. ( -27.00) >DroEre_CAF1 13055 120 + 1 UGAAAUCACUUGAAAAGCUGCACAGUAUGUAUAUGUAGUAUUGCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCCUAGAGACUUCUGUGGCUUUCCCCACUUUUGAAACCCGACC .....(((((((((((..(((...(((((((..........)))))))......)))..))))))))((((((((.....))))))))...((((......))))...)))......... ( -25.80) >DroYak_CAF1 13223 107 + 1 UGAAAUCACUUGAAAAGCUGCAUAGUAUGUA-------------AUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCCUAGAGACUUCUGUGGCUUUCCCCACUUUUGAAACCCGACC .....(((((((((((..(((..(((.....-------------....)))...)))..))))))))((((((((.....))))))))...((((......))))...)))......... ( -20.80) >consensus UGAAAUCACUUGAAAAGCUGCAAAGUAUGUAUAUAUAGUAUUGCAUACACUUAGGCACAUUUUCAAGAGUUUUUAAAUCCUAGAGACUUCUGUGGCUUUCCCCACUUUUGAAACCCGACC .....(((((((((((..(((...(((((((..........)))))))......)))..))))))))((((((((.....))))))))...((((......))))...)))......... (-21.02 = -22.27 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:37 2006