Locus 1639

Sequence ID 3R_DroMel_CAF1
Location 4,774,381 – 4,774,501
Length 120
Max. P 0.976485
window2697

overview

Window 7

Location 4,774,381 – 4,774,501
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.42
Mean single sequence MFE -22.70
Consensus MFE -13.70
Energy contribution -15.36
Covariance contribution 1.66
Combinations/Pair 1.12
Mean z-score -2.61
Structure conservation index 0.60
SVM decision value 1.77
SVM RNA-class probability 0.976485
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4774381 120 + 27905053
UGAAGUAUCUUCUUCACUCUCCAUCUCCAUCAAUUAAGCACUGCCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUCAGGAUUCCCCCAUC
(((((......)))))....................((((......))))((((((((..((......))..))))))))...(.(((((((((.........))))))))).)...... ( -24.80)
>DroSec_CAF1 9916 118 + 1
UGAAGUAUCUUCUUCACUCUCCAUCUCCAUCAAUUAAGCACUACCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUC--AAUCUCGGGCACUUCAAUCUCAGGAUUCCCCCAUC
((((((..((..........................((((......))))((((((((..((......))..))))))))...--......))..))))))......((......))... ( -23.60)
>DroEre_CAF1 10017 120 + 1
UGAAGUAUCUUCUUCAGUCUCCAUCCUCAUCAAUUAUACACUUCCAUGCUGCUUGAGCCAACCUAAAUGUGUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUUAGGAUUCCCCCAUC
(((((......)))))..............................((((((((((((..((......))..)))))))))..)))....((((....((........))....)))).. ( -23.20)
>DroYak_CAF1 10159 120 + 1
UGAGGCAUCUUCUUCACUCUCCAUCCUCAUCAAUCAAAGACUUCCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUUAGGAUUCCCCCAUC
(((((...................))))).................((((((((((((..((......))..)))))))))..)))....((((....((........))....)))).. ( -22.91)
>DroAna_CAF1 9915 94 + 1
GGAAUUAUCUUU---A-UUUCAAUCUUCCUCU----AAAGCU----UCCUUCUUAAGCCAACCUAAAUGCCUGCUUAGGCAUUUCAAUCUUG--------------AGGAAUCCCCCAUU
(((((.......---)-))))....((((((.----...(((----(.......))))......((((((((....)))))))).......)--------------)))))......... ( -19.00)
>consensus
UGAAGUAUCUUCUUCACUCUCCAUCUUCAUCAAUUAAACACUUCCAUGCUGCUUAAGCCAACCUAAAUGUCUGCUUAGGCAUCGCAAUCUUGGGCACUUCAAUCUCAGGAUUCCCCCAUC
(((((......))))).................................(((((((((..((......))..)))))))))....(((((((((.........)))))))))........ (-13.70 = -15.36 +   1.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:29 2006