Locus 1638

Sequence ID 3R_DroMel_CAF1
Location 4,772,252 – 4,772,349
Length 97
Max. P 0.791640
window2696

overview

Window 6

Location 4,772,252 – 4,772,349
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.13
Mean single sequence MFE -31.12
Consensus MFE -13.30
Energy contribution -15.33
Covariance contribution 2.03
Combinations/Pair 1.12
Mean z-score -2.32
Structure conservation index 0.43
SVM decision value 0.59
SVM RNA-class probability 0.791640
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4772252 97 - 27905053
UUGCUGCCG------UUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAGUGU---AGA-----UGCGGCAAAACAGGCAGGC---AAAAAAAA
((((((((.------(((((((....((((((((((((.......))))))).....(((((....)------))))))---)))-----.)))))))....)))).))---))...... ( -36.70)
>DroSec_CAF1 7673 96 - 1
UUGCUGCCG------CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAGUGUAGUAGA-----UGCGGCCAAGCAGGCAGGC---AAAA----
(((((((((------(((((((....((((((((((((.......))))))).....(((((....)------))))...)))))-----.)))))..))).)))).))---))..---- ( -36.50)
>DroSim_CAF1 6116 102 - 1
UUGCUGCCGCUGCCGCUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAGUGUAGUAGA-----UGCGGCCAAGCAGGCAGGC---AAAA----
....((((..((((((((((((....((((((((((((.......))))))).....(((((....)------))))...)))))-----.)))))..))).)))))))---)...---- ( -37.40)
>DroEre_CAF1 7845 95 - 1
UUGCUGCCG------CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCGAGCUCGUGUGU------GAG-----UAGA-----UGCGGGCCAGCAGGCAAAA---AACAAAAA
....(((((------(((..((((((((((((((((((.......))))).(..((....))..)..------)))-----))))-----.)))))))))).))))...---........ ( -27.80)
>DroYak_CAF1 7864 95 - 1
UUGCUGCCG------CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU------GAG-----UAGA-----UACGGGCAAGCAGGCAAAA---AAUAAAAA
....(((((------((...((((((((((((((((((.......)))))))((...((....))..------)))-----))))-----.)))))).))).))))...---........ ( -26.00)
>DroAna_CAF1 7680 108 - 1
UUGUU------------GCCGGUUGUUCUACUUUGAAAUUUCACUUUUCAAAUGUAAGCUUGUGUCUAUGACUGUGUGUGCUAGAGUGUGUGCCGUCGGUUGUGCAGAAGAAAAAAACAA
.((((------------.....((.(((((((((((((.......))))))).)))....((..(...((((.(..((..(....)..))..).))))...)..))))).))...)))). ( -22.30)
>consensus
UUGCUGCCG______CUGCCGCUUGUUCUACUUUGAAAUUUCACUUUUCAAAUCCCAGCUCGUGUGU______GAGUGU__UAGA_____UGCGGCCAAGCAGGCAGAA___AAAAAAAA
...(((((.........(((((....((((.(((((((.......))))))).....((((............))))....))))......)))))......)))))............. (-13.30 = -15.33 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:28 2006