Locus 1636

Sequence ID 3R_DroMel_CAF1
Location 4,769,170 – 4,769,282
Length 112
Max. P 0.890311
window2693

overview

Window 3

Location 4,769,170 – 4,769,282
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.53
Mean single sequence MFE -28.87
Consensus MFE -17.70
Energy contribution -16.85
Covariance contribution -0.85
Combinations/Pair 1.46
Mean z-score -1.72
Structure conservation index 0.61
SVM decision value 0.96
SVM RNA-class probability 0.890311
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4769170 112 + 27905053
-----AAACU--UCAUU-UCGUACCUUAGCCUGCUGAUCGAUCUCCUUGUCUAUGGCUUCCACCUUGGCCAGAUACUUGAGGUGCAGCUCCAGCAGGCGAUCCACCUUCUCGUGAUCAUU
-----.....--.....-..........((((((((...(((......)))...((((..(((((..(........)..))))).)))).))))))))((((.((......))))))... ( -32.90)
>DroVir_CAF1 6329 116 + 1
UUUAUGGACU--UAAGG--CUUACCUUGGGUUGCUGAUCUAUUUCCCUGUCGAUGGCCUCCACCUUAGCCAAAUACUUGAGAUGUAGCUCCAGCAGGCGAUCAACCUUCUCGUGAUCGUU
......((((--(((((--....)))))))))((((..((((.(((..((...((((..........))))...))..).)).))))...)))).((((((((.........)))))))) ( -30.20)
>DroGri_CAF1 4834 114 + 1
----UGCGCU--UGAUUUGCUUACCUUCGGCUGCUGGUCGAUUUCCCUGUCAAUGGUUUCCACUUUGGCCAAAUAUUUGAGAUGCAGCUCCAGCAGACGAUCAACCUUCUCGUGAUCGUU
----(((((.--......))........((((((..((((((......)))..(((((........))))).........)))))))))...)))((((((((.........)))))))) ( -27.90)
>DroWil_CAF1 5188 113 + 1
-----ACAAU--UCAAUGACCAACCUUAAUCUGUUGAUCGAUUUCUUUAUCGAUGGCCUCCACUUUGGCCAAGUAUUUCAAAUGCAACUCCAACAGACGGUCCACCUUUUCAUGAUCGUU
-----.....--..(((((.((.......(((((((((((((......))))))((((........))))..((((.....)))).....))))))).((....))......)).))))) ( -27.20)
>DroMoj_CAF1 4846 112 + 1
C------AGC--UAAGGCACUCACCUUUGGUUGCUGAUCAAUUUCUUUGUCGAUGGCCUCCACCUUGGCCAAAUACUUGAGAUGCAGCUCCAGCAGGCGAUCAACCUUUUCGUGAUCGUU
.------.((--(((((......)))).((..((((....(((((...((...(((((........)))))...))..))))).)))).))))).((((((((.........)))))))) ( -33.60)
>DroAna_CAF1 4590 112 + 1
-------ACUUUACGUU-ACUUGCCUUUGUCUGCUGAUCUAUUUCCUUAUCGAUAGCCUCCACCUUGACCAGAUAUUUCAAGUGAAGCUCCAGCAGUCGGUCCACCUUCUCGUGGUCAUU
-------..........-.........((.(((((((((.((......)).)))(((.((...(((((.........))))).)).))).)))))).))(.((((......)))).)... ( -21.40)
>consensus
_______ACU__UCAUU_ACUUACCUUAGGCUGCUGAUCGAUUUCCUUGUCGAUGGCCUCCACCUUGGCCAAAUACUUGAGAUGCAGCUCCAGCAGGCGAUCAACCUUCUCGUGAUCGUU
..............................((((((....(((((...((...(((((........)))))...))..))))).......))))))((((((.((......)))))))). (-17.70 = -16.85 +  -0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:25 2006