| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,762,217 – 4,762,320 |
| Length | 103 |
| Max. P | 0.653148 |
| Location | 4,762,217 – 4,762,320 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 65.04 |
| Mean single sequence MFE | -35.58 |
| Consensus MFE | -12.26 |
| Energy contribution | -11.90 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4762217 103 - 27905053 UUCAGUCG---GUUCGGUUUUCUGGCUUUGGGUUCUGC---AGCUUGGCUGAUGCCCAGGUGGAGCCAAAUUGAUUGGUUCCUCUGGGGCAUCGGGGCUGUAGAUGUUG ...(((((---(.........))))))......(((((---((((...(((((((((.((.((((((((.....)))))))).)).))))))))))))))))))..... ( -49.10) >DroSec_CAF1 1409 103 - 1 UUCAGUCG---GUUCAGUUUUCUUGCUCUGGGUUCUGCAGCAGCUUGGCUGUUGCCCAGGUGCAGCCAAAUGGGUUGGUUCCUCCGGGGCAUCG---CUGUAGAUGUUG ....(((.---...((((.....((((((((.....((((((((...))))))))..(((..(((((.....)))))...)))))))))))..)---)))..))).... ( -37.40) >DroSim_CAF1 1412 103 - 1 UUCAGUGG---GUUCGGGUUUCUUGCUCUGGGUUCUGCAGCAGCUUGGCUGUUGCCCAGGUGCAGCCAAAUGGGUUGGUUCCUCCGGGGCAUCG---CUGUAGAUGUUG ..((((((---((((.((.....((((((((((...(((((......))))).))))))).)))(((((.....)))))....)).)))).)))---)))......... ( -39.80) >DroYak_CAF1 1414 103 - 1 CUCAGUCGUCUGUUGGGUUUUCUGGUUUUGGGUUCUGC---AGCUUGGCUGAUGCCCAGGUGCAUCCAAAUGGAUUCGUUCCUCCGGGGCAUCG---CUGUAGAUGUUG ..(((.((((((..((((.((((((.((((((...(((---(.((.(((....))).)).)))))))))).(((.....))).)))))).))).---)..))))))))) ( -34.70) >DroAna_CAF1 1295 88 - 1 UU-----G---GUUCUGGCU--GGGGUGUGGGUUCUG--GCA------AUGUUGCUCUGGAUCUGUAACCUGGGUCUGCCGAUCCGGAGUAUCG---ACGUAAAUGUUG ..-----.---......((.--.(..(....)..)..--)).------(((((((((((((((.(((((....)).))).))))))))))...)---))))........ ( -29.10) >DroPer_CAF1 1347 82 - 1 -U-----G---GUUCUGGCU--GU---UGGAAUUACG--AAG------AUGGUUUUCUUGGGCCGGCAACGGCGGUGGCUUCUCUGGAGGAUCG---GCAAAGAUGU-- -(-----(---((((..(..--.)---..))))))(.--(((------(......)))).)((((....))))(.(((((((....)))).)))---.)........-- ( -23.40) >consensus UUCAGUCG___GUUCGGGUUUCUGGCUUUGGGUUCUGC_GCAGCUUGGCUGUUGCCCAGGUGCAGCCAAAUGGGUUGGUUCCUCCGGGGCAUCG___CUGUAGAUGUUG ..................................................(.(((((.((.(.((((((.....)))))).).)).))))).)................ (-12.26 = -11.90 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:17 2006