Locus 1630

Sequence ID 3R_DroMel_CAF1
Location 4,757,852 – 4,757,969
Length 117
Max. P 0.521437
window2682

overview

Window 2

Location 4,757,852 – 4,757,969
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 81.42
Mean single sequence MFE -28.04
Consensus MFE -15.56
Energy contribution -17.28
Covariance contribution 1.72
Combinations/Pair 1.14
Mean z-score -1.89
Structure conservation index 0.55
SVM decision value -0.02
SVM RNA-class probability 0.521437
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4757852 117 - 27905053
CGACUUAAGUUAUCGAUAACUUAUUGAUGAACCAUUUUGUUGUUACUCGCUAGUAAUGGCGAUUCGUUAGCAGUUAAGAGCUUAAAGGCUAGAACGAAAUCCAAAUAGACAGACGAA
((.......(((((((((...))))))))).....((((((.....((((((....))))))(((((((((..((((....))))..))))..))))).........)))))))).. ( -28.20)
>DroSec_CAF1 85527 116 - 1
CGACUUAAGUUAUCGAUAACUUGUUGAUGAACCAUUUUGUUGUUACUCGCCAGUAAUGGCGAUCCGUUAGCGGUUACCAGCU-AAAGGCUAGAAAGAAAUGUAAAUAGCCAGACGAA
((((..((.((((((((.....))))))))....))..))))....((((((....))))))..(((((((........)))-...(((((...(....).....))))).)))).. ( -31.90)
>DroSim_CAF1 89460 116 - 1
CGACUUAAGUUAUCGAUAACUUGUUGAUGAACCAUUUUGUUGUUACUCGCCAGUAAUGGCGAUCCGUUAGCGGUUACCAGCU-AAAGGCUAGAAAGAAAUCUAAAUAGCCAGACGAA
((((..((.((((((((.....))))))))....))..))))....((((((....))))))..(((((((........)))-...(((((...((....))...))))).)))).. ( -33.20)
>DroEre_CAF1 90109 115 - 1
CGUU-UAAGUUUUCGAUAACUUUUCGAUUAAGCAUUUUG-UGUUACUCGCCAGUAGUGGCGAUUAUUUAGCGAUAACCAGCUAGAAGGCCUAUAGCAAAUCAAAAUAGCCCGAUAAA
.(((-(((....((((.......))))))))))((((((-(((((.((((((....))))))...((((((........)))))).......)))))...))))))........... ( -25.20)
>DroYak_CAF1 89933 110 - 1
CGUUUUAAGUUUUCGAUAACUUUUCGAUUAAACAUUUCU-UGUUACUCACCAGUAAUGACGAUUCUUUAGCGGUAACCAGCUAAAAGGCUAUCAACAACUCAAAAUAGCC------A
((((....((((((((.......))))..))))......-.((((((....))))))))))....((((((........)))))).((((((............))))))------. ( -21.70)
>consensus
CGACUUAAGUUAUCGAUAACUUGUUGAUGAACCAUUUUGUUGUUACUCGCCAGUAAUGGCGAUUCGUUAGCGGUUACCAGCU_AAAGGCUAGAAAGAAAUCAAAAUAGCCAGACGAA
.........((((((((.....))))))))................((((((....))))))......(((........)))....(((((..............)))))....... (-15.56 = -17.28 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:14 2006