Locus 163

Sequence ID 3R_DroMel_CAF1
Location 821,186 – 821,294
Length 108
Max. P 0.604916
window271

overview

Window 1

Location 821,186 – 821,294
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.65
Mean single sequence MFE -40.30
Consensus MFE -28.04
Energy contribution -29.08
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -1.98
Structure conservation index 0.70
SVM decision value 0.14
SVM RNA-class probability 0.604916
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 821186 108 - 27905053
UACCAGAUUGCCGUGAAUUCAUAGUCG--------UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA----AGUGGGCGCCCUGAACCUGAAUGAAUCGGGGAAUGGGAA
..(((..((.(((...(((((.....(--------(((....))))..(((((((((((((((........)))).)----)))...)))))))....)))))....))).)).)))... ( -34.60)
>DroSec_CAF1 3945 108 - 1
UACCAGAUUGCCGUGAAUUCAUGGUCG--------UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA----AGUGGGCGCCCAAAACCUGAAUGAAUCGGGGAAUGGGAA
..((.....((((((....))))))((--------((((((((..(..((((.......((((........))))..----..(((....)))...))))...)..)))))))))))).. ( -38.80)
>DroSim_CAF1 1124 108 - 1
UACCAGAUUGCCGUGAAUUCAUGGUCG--------UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA----AGUGGGCGCCCAAAACCUGAAUGAAUCGGGGAAUGGGAA
..((.....((((((....))))))((--------((((((((..(..((((.......((((........))))..----..(((....)))...))))...)..)))))))))))).. ( -38.80)
>DroEre_CAF1 4375 107 - 1
CACCAGAUUGCCGUGAAUUCAUGGUG---------UUCCUCGGAGCUGCGGGGUUAUUUGCCAGUGUAGGAUGACUA----GGUAGGCGCCCCAAACCUAAAUGGAUCGGGGAAUGGGAA
..((.....((((((....))))))(---------((((((((......(((((.....(((..(.(((.....)))----.)..))))))))...((.....)).)))))))))))... ( -39.60)
>DroYak_CAF1 1910 120 - 1
UACCAGAUUGCCGUGAAUUCAUGGUGGUUCUUCGGUUCCUCGGAGUUGCGGGGUGAUUUGCCUGUGAAGGAUAGCUACAUAAGUGGGCGCCCUGAACCUGAAUGGAUCGGGGAAUGGGAA
..(((.((..(((((....)))))..))((((((((((.((((.(((.(((((((.((..(.((((.((.....)).)))).)..))))))))))))))))..)))))))))).)))... ( -49.70)
>consensus
UACCAGAUUGCCGUGAAUUCAUGGUCG________UUCCUCGGAGCUGCGGGGUGAUUUGCCAGGGAAGGAUGGCUA____AGUGGGCGCCCAAAACCUGAAUGAAUCGGGGAAUGGGAA
..(((....((((((....))))))..........((((((((..(..((((.......((((........)))).........((....))....))))...)..)))))))))))... (-28.04 = -29.08 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:26 2006