| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,753,631 – 4,753,742 |
| Length | 111 |
| Max. P | 0.982723 |
| Location | 4,753,631 – 4,753,742 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.23 |
| Mean single sequence MFE | -20.39 |
| Consensus MFE | -13.50 |
| Energy contribution | -14.75 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4753631 111 + 27905053 AGACACUAGACGAAAGUAUGUACACAUCACAUCCAUUAUAUCUUUUAGCAAAUAAAUGAUGAGUGGCAAGUUCUAUUAUUUGCACCUGUGCUGUGCUGUAUACUCUACCUA ..............((((((((((((.((((..((((.((((.((((.....)))).))))))))((((((......))))))...)))).)))).))))))))....... ( -23.70) >DroSec_CAF1 81422 111 + 1 AGACACUAAACCAAAGUAUAUACACAACACAUCCAUUUUAUCUUGUACCAAAUAAGUUAUGAAAGGCAAGUUCUAUUAUUUGCACCUGUGCUGUGCUGUAUACUCUACCUA ..............((((((((((((.((((....(((((((((((.....)))))..)))))).((((((......))))))...)))).)))).))))))))....... ( -24.30) >DroSim_CAF1 85385 111 + 1 AGACACUAAACCAAAGUAUGUACACAACACAUCCAUUUUAUCUUUUACCAAAUAAAUUAUAAGAGGCAAGUUCUAUUAUUUGCACCUGUGCUGUUCUGUAUACUCUACCUA ..............((..((((((.(((((((...((((((..((((.....))))..)))))).((((((......))))))....))).)))).))))))..))..... ( -17.80) >DroYak_CAF1 85614 89 + 1 AAAUAC----------UACG-------UACAUCUAUCAUAUUUUUUACCAACAAAUUGAUAAGAAGCAAGUUCUAUUAUUUGCACCUGUGCUGU-----GUGUUCUACCUA .(((((----------.(((-------(((((((((((..................)))).))).((((((......))))))...))))).))-----)))))....... ( -15.77) >consensus AGACACUAAACCAAAGUAUGUACACAACACAUCCAUUAUAUCUUUUACCAAAUAAAUGAUAAGAGGCAAGUUCUAUUAUUUGCACCUGUGCUGUGCUGUAUACUCUACCUA ..............((((((((((((.((((..........((((((.((......)).))))))((((((......))))))...)))).)))).))))))))....... (-13.50 = -14.75 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:13 2006