Locus 1628

Sequence ID 3R_DroMel_CAF1
Location 4,744,821 – 4,744,911
Length 90
Max. P 0.619401
window2680

overview

Window 0

Location 4,744,821 – 4,744,911
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 90.92
Mean single sequence MFE -32.12
Consensus MFE -25.95
Energy contribution -26.12
Covariance contribution 0.17
Combinations/Pair 1.12
Mean z-score -2.17
Structure conservation index 0.81
SVM decision value 0.18
SVM RNA-class probability 0.619401
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4744821 90 + 27905053
UUUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGCUGCCGCCGAAGUCGGG
...((((.(((-((.....))))).)))).........((((((((((((((........)))))..(((......))))))..)))))). ( -33.10)
>DroSec_CAF1 73010 90 + 1
UGUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGACGAGCUGCCGCCGAAGUCGGG
...((((.(((-((.....))))).)))).........(((((((((((.((.........((((......)))))))))))..)))))). ( -32.40)
>DroSim_CAF1 76636 90 + 1
UGUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGCUGCCGCCGAAGUCGGG
...((((.(((-((.....))))).)))).........((((((((((((((........)))))..(((......))))))..)))))). ( -33.10)
>DroEre_CAF1 76984 90 + 1
AGUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGGCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGUUGCCGCCGAAGUCAGA
...((((.(((-((.....))))).)))).........((((((((((((((........)))))..(((......))))))..)))))). ( -33.70)
>DroYak_CAF1 76693 90 + 1
GUUGACUGCCA-UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCAGAGCUGCCGCCGAAGUCAGG
...((((.(((-((.....))))).)))).........((((((((((((((........)))))..((((....)))))))..)))))). ( -36.10)
>DroAna_CAF1 73607 91 + 1
GCAGUCUGCAAAUUUCAACAGUGGGAGUCGUUAAAUGUCUAACUGGCGGGCACAAAUUAAUGCUCAUAGUUGAGGUGCCGUCGCAGUCAGG
...(.((((.........((((...((.(((...))).)).))))...(((((...(((((.......))))).)))))...)))).)... ( -24.30)
>consensus
UGUGACUGCCA_UUUUUACAGUGGGAGUCGUAAAAUGUCUGACUGGCGGGCACAAAUUAAUGCUCAUGGCCGAGCUGCCGCCGAAGUCAGG
...((((.(((..........))).)))).........(((((((((((.((.........((((......)))))))))))..)))))). (-25.95 = -26.12 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:12 2006