Locus 1624

Sequence ID 3R_DroMel_CAF1
Location 4,714,569 – 4,714,659
Length 90
Max. P 0.905999
window2674

overview

Window 4

Location 4,714,569 – 4,714,659
Length 90
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -23.50
Consensus MFE -12.56
Energy contribution -12.75
Covariance contribution 0.19
Combinations/Pair 1.21
Mean z-score -2.91
Structure conservation index 0.53
SVM decision value 1.04
SVM RNA-class probability 0.905999
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4714569 90 - 27905053
UGUGGUUCGACUAUAUGUA--------UGUACAUGACGAUAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU
(((((..((...(((((((--------(((.((((........))))))(((.(((((....))))).))).....))))))))...))..))))).. ( -22.10)
>DroSec_CAF1 59772 94 - 1
UGUGGUUCGACUAUAUGUACCUAUAUAUGUACAU----ACAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU
(((((..((...((((((((((((((((((....----))))))))...(((.(((((....))))).))))))...)))))))...))..))))).. ( -27.20)
>DroEre_CAF1 63437 93 - 1
UGUG-UAUGACUAUAUGCUUAUACACAUAGGUAU----AUAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU
((((-((((((.....).)))))))))(((((((----((((.((((....)))).))))))))))).....(((.(((......))).)))...... ( -24.30)
>DroYak_CAF1 62380 85 - 1
UGUG-UCUGACUACAUGUAUAUA--------UGU----UUAUAUAUGAGUAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU
.(((-(.(((...((((((((..--------...----.))))))))(((((((....)))))))....)))(((.(((......))).))).)))). ( -20.40)
>consensus
UGUG_UUCGACUAUAUGUAUAUA____UGUACAU____AUAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU
((((..........((((((........))))))...............(((.(((((....))))).))).(((.(((......))).))))))).. (-12.56 = -12.75 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:07 2006