Locus 1614

Sequence ID 3R_DroMel_CAF1
Location 4,658,415 – 4,658,522
Length 107
Max. P 0.790710
window2659

overview

Window 9

Location 4,658,415 – 4,658,522
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.84
Mean single sequence MFE -43.58
Consensus MFE -28.63
Energy contribution -28.30
Covariance contribution -0.33
Combinations/Pair 1.36
Mean z-score -1.61
Structure conservation index 0.66
SVM decision value 0.59
SVM RNA-class probability 0.790710
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4658415 107 + 27905053
--------UGA-----AACUUACCCCAUUCUCCCAAGGAGUUGUGCCUCCGCUGCCACUGCUACCACCACUUUGCACCGGUGGCCUAUAGUUUUUGGGUUUGGGUGGUGGCACCGGCUUG
--------...-----....................((((......))))...(((..((((((((((.(...((.((((..((.....))..))))))..)))))))))))..)))... ( -35.10)
>DroVir_CAF1 9711 112 + 1
---UGAUUAGU-----UACUUACGCCAUUCUCCCAGGGCGUGGUGCCACCGCUGCCACUGCUACCGCCGCUCUGCACAGGCGGCCGAUAGUUUUUGGGCUUGGGUGGUGGCACGGGCUUA
---.....(((-----(...((((((..........))))))((((((((((((((...(((((.(((((.((....))))))).).)))).....)))...))))))))))).)))).. ( -49.30)
>DroPse_CAF1 8686 115 + 1
CCCCGUCUGUU-----CACUUACGCCGUUUUCCCAGGGUGUGGUGCCCCCGCUGCCGCUGCUCCCACCGCUCUGCACCGGAGGACGAUAGUUCUUCGGUUUCGGUGGCGGCACUGGCUUG
....((..(..-----((((.(((((.(......).)))))))))..)..)).((((.((((.((((((......((((((((((....))))))))))..)))))).)))).))))... ( -47.40)
>DroGri_CAF1 10144 117 + 1
---CGUUUAGUUAAUCUACUUACGCCAUUCUCCCAGGGUGUGGUGCCACCACUGCCGCUGCUGCCGCCGCUCUGCACGGGUGGUCGAUAGUUUUUGGGCUUGGGCGGCGGCACUGGCUUG
---.((..(((......))).))(((((.((.....)).)))))((((....((((((((((((((((((((.....)))))))(((......))))))...)))))))))).))))... ( -45.90)
>DroWil_CAF1 11407 110 + 1
-----UCUGUA-----CACUUACCCCAUUUUCCCAGGGUGUGGUGCCACCACUGCCACUGCUACCACCGCUCUGGACGGGCGGACGAUAGUUCUUGGGUUUUGGUGGUGGUACCGGUUUG
-----......-----....(((((..........)))))((((((((((((((((...((((.(.((((((.....))))))..).)))).....)))...)))))))))))))..... ( -43.30)
>DroAna_CAF1 11798 107 + 1
--------AGU-----AACUUACCCCAUUCUCCCAAGGUGUGGUGCCACCACUGCCACUGCUACCACCACUUUGCACUGGUGGCCUGUAGUUUUUGGGCUUGGGCGGUGGCACCGGCUUA
--------...-----...................((((.((((((((((.((((((((((..((((((........))))))...))))).....)))...)).)))))))))))))). ( -40.50)
>consensus
_____U_UAGU_____AACUUACCCCAUUCUCCCAGGGUGUGGUGCCACCACUGCCACUGCUACCACCGCUCUGCACCGGUGGCCGAUAGUUUUUGGGCUUGGGUGGUGGCACCGGCUUG
...................................((((.(((((((.((((((((...((((...(((((.......)))))....)))).....)))...))))).))))))))))). (-28.63 = -28.30 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:52 2006