Locus 1613

Sequence ID 3R_DroMel_CAF1
Location 4,658,201 – 4,658,294
Length 93
Max. P 0.809005
window2658

overview

Window 8

Location 4,658,201 – 4,658,294
Length 93
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 87.47
Mean single sequence MFE -41.78
Consensus MFE -31.86
Energy contribution -30.26
Covariance contribution -1.60
Combinations/Pair 1.37
Mean z-score -1.90
Structure conservation index 0.76
SVM decision value 0.64
SVM RNA-class probability 0.809005
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4658201 93 + 27905053
CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGUGGUGGUG---GCUGCAUGUGGCCAUUGCUGGGUGAACCCGGGGUCGCCU
....((.(((((((((.((((.(((.(..(....)..)))).)))).)))))))---)).))..((((((....(((((....))))))))))).. ( -45.20)
>DroSec_CAF1 7915 93 + 1
CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGUGGUGGUGGUG---GCUGCAUGUGGCCAUUGCUGGGUGAACCAGGAGUCGCCU
(((.((.(((((((((.((((.(((.(..(....)..)))).)))).)))))))---)).))))).(((.(((.((((.....)))).))).))). ( -41.30)
>DroSim_CAF1 8135 93 + 1
CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGUGGUGGUG---GCUGCAUGUGGCCAUUGCUGGGUGAACCCGGGGUCGCCU
....((.(((((((((.((((.(((.(..(....)..)))).)))).)))))))---)).))..((((((....(((((....))))))))))).. ( -45.20)
>DroYak_CAF1 8337 93 + 1
CAUAGGUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGCGGCGGUG---CCUGCAUGUGGCCAUUGCUGGGUGAACCGGGAGUCGCCU
..((((..((.......(((((...)))))((((((((....))))))))))..---)))).....(((.(((.((((.....)))).))).))). ( -47.20)
>DroAna_CAF1 11577 96 + 1
CGUAGUUUCCGUUACUGCCACCGUAUGUGGGCUGCUGCUGUUGCUGCUGCGGCGUCUGUUGCAUGUGUCCGUUGCUGGGAGAGCCAGGAGUAGGCU
.(((((.......)))))....(((.(..(((.(((((.((....)).))))))))..))))....(((..((.((((.....)))).))..))). ( -30.00)
>consensus
CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGUGGUGGUG___GCUGCAUGUGGCCAUUGCUGGGUGAACCAGGAGUCGCCU
..((((...((((....((((.....))))((((((((....))))))))))))...)))).....(((.(((.((((.....)))).))).))). (-31.86 = -30.26 +  -1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:51 2006