| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 812,528 – 812,623 |
| Length | 95 |
| Max. P | 0.525707 |
| Location | 812,528 – 812,623 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 82.82 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -22.58 |
| Energy contribution | -21.58 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 812528 95 - 27905053 --CCCUCU--CGUU-----CCCAGGUCAGCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUCGCCUUUGU --...(((--.((.-----(.((((....((((((((.....(((((((((...)))))))))))))))))..)))).).))))).((((.....))))..... ( -28.70) >DroVir_CAF1 25430 97 - 1 --CUCUCUACCUCUC-----ACAGGUUAGCGAUAAAUUCCUGGAUGCCUAUAAGGUCGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUUGCCUUUGU --.....((((((((-----(((((....((((((((.....((((((.........))))))))))))))..)))..))).))).)))).............. ( -20.50) >DroGri_CAF1 22821 93 - 1 --UUGU---------UUUCUGCAGGUUAGCGAUAAAUUUCUGGAUGCCUAUAAGGUUGGCAUUAUUUAUUGGCCCUGCGUGCAGACGAUAAACUUUGCCUUCGU --((((---------(.((((((.((..(((((((((.....((((((.........))))))))))))).))...)).)))))).)))))............. ( -25.90) >DroEre_CAF1 143 96 - 1 CCUCCUCU---GUU-----CCCAGGUCAGCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUCGCCUUCGU .....(((---((.-----(.((((....((((((((.....(((((((((...)))))))))))))))))..)))).).))))).((((.....))))..... ( -32.50) >DroWil_CAF1 21935 94 - 1 --UC-UUU--GCCU-----UGCAGGUUAGCGAUAAAUUCUUGGACGCCUAUAAGGUGGGCGUUAUUUAUUGGCCCUGUGUGCAAACGGUGAACUUCGCCUUUGU --..-(((--((..-----((((((....((((((((.....(((((((((...)))))))))))))))))..)))))).))))).((((.....))))..... ( -31.10) >DroYak_CAF1 143 94 - 1 --UCCUCU---GUU-----UCCAGGUCGCCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUACAGACGGUGAACUUCGCUUUCGU --...(((---((.-----..((((..((((((((((.....(((((((((...)))))))))))))))))))))))...))))).((((.....))))..... ( -35.90) >consensus __UCCUCU___GUU_____UCCAGGUCAGCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUCGCCUUCGU .....................((((....((((((((.....(((((((((...)))))))))))))))))..))))......((.((((.....)))).)).. (-22.58 = -21.58 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:22 2006