Locus 1609

Sequence ID 3R_DroMel_CAF1
Location 4,651,049 – 4,651,155
Length 106
Max. P 0.754854
window2653

overview

Window 3

Location 4,651,049 – 4,651,155
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 80.80
Mean single sequence MFE -31.12
Consensus MFE -24.03
Energy contribution -24.53
Covariance contribution 0.50
Combinations/Pair 1.15
Mean z-score -1.52
Structure conservation index 0.77
SVM decision value 0.49
SVM RNA-class probability 0.754854
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4651049 106 - 27905053
CAUUACAUUGACUAAAUGGACUCACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGGUUAGUGGCUUCAUGCUUGCGAUAGUUGACC
............(((((((......)))))))....(((((.(((.((((((((((((.((((.(((.......)))))))..))))))))))))))))))))... ( -37.10)
>DroGri_CAF1 773 90 - 1
------------UC----UAGUUACCCAUUCAAGGCCAGCUCGUCGGCGAGAAUGGAGAGCUGCACCACGUAGGGAUUGGUGGCCUCGUGCUUGCGAUAGUUGACC
------------..----...............((.(((((.((((.((((....(((.((..(.((.....)).....)..)))))...))))))))))))).)) ( -25.80)
>DroSim_CAF1 985 95 - 1
-----------CUAAAUGGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGGUUAGUAGCUUCAUGCUUGCGAUAGUUGACC
-----------.(((((((......)))))))....(((((.(((.(((((((((..((((((((((.......)))..))))))))))))))))))))))))... ( -36.10)
>DroEre_CAF1 775 105 - 1
CAU-CCAUUGACUACUUUGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGGUUCGUUGCUUCGUGCUUGCGAUAGUUGACC
...-..........((((((.........)))))).(((((.(((.(((((((((((((((.((.((......))))..))).))))))))))))))))))))... ( -29.10)
>DroYak_CAF1 980 105 - 1
CAA-GCAUUGACUAGAUGGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGAUUCGUGGCUUCAUGCUUGCGAUAGUUGACC
...-........(((((((......)))))))....(((((.(((.(((((((((..((((..(.((.....)).....)..)))))))))))))))))))))... ( -33.60)
>DroMoj_CAF1 747 103 - 1
AGA-GCAUUAACUGAU--UAUUUACCCAUUCAAUGCGAGCUCGUCGGCCAAAAUGGAGAGCUGCACCACAUACGGAUUGGUUGCCUCGUGCUUGCGAUAGUUCACC
.((-((......(((.--...........))).(((((((.((.(((((((..((.(....).))((......)).)))))))...)).)))))))...))))... ( -25.00)
>consensus
CA___CAUUGACUAAAUGGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGAUUAGUGGCUUCAUGCUUGCGAUAGUUGACC
....................................(((((.(((.((((((((((..((((((.((......))....))))))))))))))))))))))))... (-24.03 = -24.53 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:46 2006