Locus 1606

Sequence ID 3R_DroMel_CAF1
Location 4,623,905 – 4,624,017
Length 112
Max. P 0.978488
window2649

overview

Window 9

Location 4,623,905 – 4,624,017
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 96.88
Mean single sequence MFE -27.16
Consensus MFE -23.92
Energy contribution -24.72
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 1.81
SVM RNA-class probability 0.978488
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4623905 112 + 27905053
AGUCUUUGCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUAGACUCUUCAACGCUUUUCUUCACU
(((((......((.((((((.....))))))((...((((((......))))))...)).))......((((((.......))))))))))).................... ( -24.50)
>DroSec_CAF1 22667 112 + 1
AGUCUUUGCCCGCAUGGAGCUUGUUUCUUCAGAAUCGCAAAGAUUCCUCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCAACGCUUUUCUUCACU
.......((..((.(((((.......)))))((...(((((((....)))))))...)).))...(((((((((.......))))))))).........))........... ( -25.70)
>DroSim_CAF1 23961 112 + 1
AGUCUUUGCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCAACGCUUUUCUUCACU
(((((((((.....((((((.....)))))).....)))))))))..............(((........((((.......))))(((((....)))))))).......... ( -27.70)
>DroEre_CAF1 23888 112 + 1
AGUCUUUUCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCGACGCGUUUCUCCACU
.(((.......((.((((((.....))))))((...((((((......))))))...)).))...(((((((((.......)))))))))......)))............. ( -29.40)
>DroYak_CAF1 23752 112 + 1
AGUCUUUGCCCGCAAGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCCACGCUUUUCUUCACU
(((((((((((....)).((((.(......).))))))))))))).......((.((..((....(((((((((.......)))))))))..))..)).))........... ( -28.50)
>consensus
AGUCUUUGCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCAACGCUUUUCUUCACU
(((((((((.....((((((.....)))))).....)))))))))....................(((((((((.......)))))))))...................... (-23.92 = -24.72 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:43 2006