Locus 1602

Sequence ID 3R_DroMel_CAF1
Location 4,614,829 – 4,614,933
Length 104
Max. P 0.588143
window2643

overview

Window 3

Location 4,614,829 – 4,614,933
Length 104
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 83.94
Mean single sequence MFE -27.65
Consensus MFE -17.46
Energy contribution -18.65
Covariance contribution 1.19
Combinations/Pair 1.22
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 0.11
SVM RNA-class probability 0.588143
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4614829 104 + 27905053
AGGCAUCGCCGAUGCCUUACAAACAGCCAUCGCCAAACUAAUAGCACUGGCGUGCUUAC--GACCUGCAUGCAGAAUCGAUCUAAGCGAUCGCUGAUUAUAAGCAA
(((((((...)))))))......((((.(((((.........(((((....)))))..(--((.(((....)))..)))......))))).))))........... ( -31.80)
>DroSec_CAF1 13759 106 + 1
AGGCAUCGCCGAUGCCUUACAAACAGCCAUGGCCAAAUUAAUAGCACUGGCAUGCUGACAUGACCUGAAUGCAGAAUCAAUCUAAGCGAUUGCUGAUCACAAGCAA
(((((((...)))))))......((((.((.((..........(((..((((((....)))).))....)))(((.....)))..)).)).))))........... ( -26.10)
>DroSim_CAF1 14972 106 + 1
AGGCAUCGCCGAUGCCUUACAAACAGCCAUGGCCAAAUUAAUAGCAUUGGCAUGCUGACAUGACCUGAAUGCAGAAUCGAUCUAAGCGAUUGAUGAUCACAAGCAA
.(((((.((((((((..........((....))..........)))))))))))))....(((.(((....))).(((((((.....)))))))..)))....... ( -28.75)
>DroYak_CAF1 14516 101 + 1
AGGCAUCGCCGGUGUCUUACAAACAGCCAUGGCCACACUAAUACCAUCGGGAUGCAUA--CGACCUGAAUUCUGGAUCGAUCUAAGCAAUU---AACCGUAUGCAA
..(((((.((((((...........((....))...........)))))))))))...--(((((........)).)))......(((...---.......))).. ( -23.95)
>consensus
AGGCAUCGCCGAUGCCUUACAAACAGCCAUGGCCAAACUAAUAGCACUGGCAUGCUGAC_UGACCUGAAUGCAGAAUCGAUCUAAGCGAUUGCUGAUCACAAGCAA
.(((((.((((((((..........((....))..........)))))))))))))........(((....)))...(((((.....))))).............. (-17.46 = -18.65 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:37 2006