| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,613,300 – 4,613,391 |
| Length | 91 |
| Max. P | 0.943208 |
| Location | 4,613,300 – 4,613,391 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 79.85 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -14.01 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.943208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4613300 91 - 27905053 UUGAACUGGGUUCGGCUGAAAUUGCUUGAUUUUUGAGCUGAGCUGAGUCCAGUUGAGUUGUGUUGGCUUUGGGCUUAGAGGCUAAUUAGCU ...((((((..((((((.(....(((..(...)..)))).))))))..)))))).(((((.(((((((((.......)))))))))))))) ( -33.70) >DroSec_CAF1 12365 86 - 1 UUGAACUGGGUUCGGCUUGAAUUGCUUGAUUUUUGAGCUGAGUUGU-----CUUGAGUUUAUUUGGCUUUGGGCUUAGAGGCUAAUUAGCU .((((((.(((((((((..((..........))..)))))))....-----.)).))))))...((((...((((....))))....)))) ( -21.70) >DroSim_CAF1 13507 86 - 1 UUGAACUGGGUUCGGCUUGAAUUGCUUGAUUUUUGAGCUGAGUAGA-----GUUGAGUUGAUUUGGCUUUGGGCUUAGAGGCUAAUUAGCU ...((((..((((((((..((..........))..))))))))..)-----))).((((((((.((((((.......)))))))))))))) ( -24.80) >DroEre_CAF1 13405 71 - 1 UUGAACUGGGUUCGGCUUGGAUUGCUUGAUUUUUGAGU--------------------UAAGUUGGCGUUGGACUGGGCGGCUAAUUAGCU .....((.((((((((...(...((((((((....)))--------------------)))))...))))))))).)).((((....)))) ( -17.80) >consensus UUGAACUGGGUUCGGCUUGAAUUGCUUGAUUUUUGAGCUGAGUUGA_____GUUGAGUUGAGUUGGCUUUGGGCUUAGAGGCUAAUUAGCU .....((((((((((((((((..........))))))))...............(((((.....))))).)))))))).((((....)))) (-14.01 = -14.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:36 2006