Locus 1600

Sequence ID 3R_DroMel_CAF1
Location 4,612,580 – 4,612,675
Length 95
Max. P 0.500000
window2641

overview

Window 1

Location 4,612,580 – 4,612,675
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 83.79
Mean single sequence MFE -22.94
Consensus MFE -17.62
Energy contribution -17.99
Covariance contribution 0.37
Combinations/Pair 1.33
Mean z-score -1.49
Structure conservation index 0.77
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4612580 95 + 27905053
UCUCGAGCGCUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGAAAAAUUAG
((((..((((........))))((((..((((.......(((((((((.....)))))))))......))))..)))).....))))........ ( -25.02)
>DroVir_CAF1 19710 89 + 1
UUUCGAGCGUUGAUUUAUGCACAUUCUUCGUAUUGUUGAUUAGCUCAAUAUUCUUGAGUUGGGUUAUCUUAAAAGAACGGGAAUAGA------AA
.(((..((((......))))..(((((.(((....((((.(((((((((........)))))))))..))))....)))))))).))------). ( -18.60)
>DroGri_CAF1 18609 87 + 1
UUUCAAGCGUUGAUCUAUGCACAUUCUUCGUAUUGUUGAUUAGCUCAAUAUUCUUGAGUUGGGUUAUCUGCAAGAAAUAAAAGUGGA--------
((((..((((......))))............((((.(((.((((((((........))))))))))).))))))))..........-------- ( -17.10)
>DroSim_CAF1 12797 95 + 1
UCUCGAGCGCUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGGAAAAUUAG
((((..((((........))))((((..((((.......(((((((((.....)))))))))......))))..))))......))))....... ( -25.02)
>DroYak_CAF1 12298 95 + 1
UCUCGAGCGCUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGAAAAAUUAG
((((..((((........))))((((..((((.......(((((((((.....)))))))))......))))..)))).....))))........ ( -25.02)
>DroAna_CAF1 13221 95 + 1
UCUCGAGCGCUGAUUUAUGCGCAUUUUUCUUAUUGUUGAUCAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUAAACGAGGAAAAAUUAG
(((((.((((........))))...(((((..(...((((((((((((.....))))))).)))))...)..)))))....)))))......... ( -26.90)
>consensus
UCUCGAGCGCUGAUUUAUGCGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGAAAAAUUAG
((((..((((........))))((((((((((.......(((((((((.....)))))))))......))))))))))....))))......... (-17.62 = -17.99 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:35 2006