Locus 160

Sequence ID 3R_DroMel_CAF1
Location 808,853 – 808,946
Length 93
Max. P 0.810586
window265

overview

Window 5

Location 808,853 – 808,946
Length 93
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 66.37
Mean single sequence MFE -32.95
Consensus MFE -14.93
Energy contribution -14.92
Covariance contribution -0.00
Combinations/Pair 1.36
Mean z-score -1.95
Structure conservation index 0.45
SVM decision value 0.65
SVM RNA-class probability 0.810586
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 808853 93 + 27905053
GU------------------------UGAUGGUGGUGAAAUUUCUAUGGAAGUA---GUAGGUCCUAGUGUAGUGGUGCCCACUACUUCUGGAGCCAUCGCUCUCUUCGCUAGGAUAGUA
..------------------------......(((((((........(((((((---((.((..(((......)))..)).)))))))))(((((....))))).)))))))........ ( -29.40)
>DroSec_CAF1 5674 117 + 1
GUUGAUGUCGAUGUAUCAUCUUGUAUUGAUGUUGAUGGCAUAUAUAUGGACGUU---GUCGUUCCUGGUGUAGUGGUGCCCACUACUUCUGGACCCAUCGCUCGCUCAGCCAGGAUUGUA
...((((((.((((((((((.............))))....)))))).))))))---..((.((((((((((((((...)))))))...((....))...........))))))).)).. ( -33.02)
>DroEre_CAF1 5158 99 + 1
GCUGUUGAGGU---------------UGAUGGUGAUAAAGUUCCUAUGGACGUAGAUA------GUGGUGUAGUGGUGCCCACUAAUUCUGGAGCCAUCGCUCGUUCAGCCGCGAUAGUA
(((((((.(((---------------(((.((((((...((((((((....)))..((------((((.(((....))))))))).....))))).))))))...)))))).))))))). ( -36.90)
>DroYak_CAF1 830 105 + 1
GUUGAUGUGGA---------------UGAUGGUGGUAAAAUUUCUAUGGAUGUAUGUAUAGUUUCUGUUGUGGUGGUGCCUACUACUUCUGGAGCCAUUGCCGCUUUAUCCAGGUUAGUA
.(((((.((((---------------(((.((((((((....((....))..........(((((....(((((((...)))))))....)))))..))))))))))))))).))))).. ( -32.50)
>consensus
GUUGAUGUGGA_______________UGAUGGUGAUAAAAUUUCUAUGGACGUA___AUAGUUCCUGGUGUAGUGGUGCCCACUACUUCUGGAGCCAUCGCUCGCUCAGCCAGGAUAGUA
..........................(.((((..((...))..)))).).............((((((((((((((...))))))).....((((....)))).....)))))))..... (-14.93 = -14.92 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:20 2006