| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,598,059 – 4,598,170 |
| Length | 111 |
| Max. P | 0.620250 |
| Location | 4,598,059 – 4,598,170 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 77.74 |
| Mean single sequence MFE | -50.08 |
| Consensus MFE | -25.12 |
| Energy contribution | -26.18 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4598059 111 + 27905053 AACGCACUGGCAGUAGCUG---GUUCCGGGACUCACGAUGGAGGGCACAGGUGGCCAGGUGCCCGGCGCAACCUGCGGUGGCAGCAGGGUGCCCACAAUCAGCUGCCGGGCGAG ..(((.((((((((..(((---....))).......(((.(.((((((...(((((.(....).))).)).(((((.......))))))))))).).))).))))))))))).. ( -52.10) >DroVir_CAF1 1046 111 + 1 CACGCAACGGCAAUUACUG---CUGCCAGGCGCCACAAUGGAGGGCACAGAGGGCCAGCCAGCGGGCGGCACCUGUGGCGGCACCAGUGUUCCCACAAUCAGCUGUCGCGUGAG (((((.(((((......((---((((((((.(((.(..(((..(((.......)))..)))....).))).))..))))))))...(((....))).....))))).))))).. ( -50.30) >DroPse_CAF1 1047 105 + 1 AACACACUGGCAGUAGCUG---GUGCCUGGUGCCACAAUGGCAGG-ACUG--GGCCAGGGUCCGGGCA---AUAGUGGAGGCACCAGGGUGCCCACAAUCAACUGCCUGGUGAG ....((((((((((.((((---.(((((((.(((....((((...-....--.)))).))))))))))---.))))(..(((((....)))))..).....)))))).)))).. ( -51.60) >DroEre_CAF1 1066 111 + 1 AACGCACUGGCAGUAGCUG---GUUCCGGAAUUCACGAUAGAGGGCACAGGUGGCCAGGUGCCCGGCGGAACCAGCGGUGGCAGCAAGGUGCCCACAAUCAGCUGCCUGGCGAG ..(((...((((((.((((---((((((....((......))((((((..(....)..))))))..)))))))))).((((..((.....)))))).....))))))..))).. ( -54.50) >DroYak_CAF1 1053 111 + 1 AACGCACUGACAGUAGCUC---GUUCCGGGAUUCACGAUAGAGGGCACCGGUGGCCAGGUGCCCGGCGGAACCUGCGGUGGCAGCAAGGUGCCCACAAUCAGCUGCCUGGCGAG ..(((((((.(((......---((((((....((......))(((((((........)))))))..)))))))))))))((((((..(((.......))).))))))..))).. ( -44.80) >DroAna_CAF1 1090 114 + 1 CACGCACCGGCAGUAGCUGGAGGUUCCGGGGUUCACAAUCGAGGGCACAGGUGGCCAGGUGCCCGGCGGAAGUUGGGGCGGCACCAAAGUGCCCACAAUUAGUUGUCUGGUGAG ....(((((((((...((((.....)))).............((((((.((((.((..((.((((((....))))))))))))))...))))))........))).)))))).. ( -47.20) >consensus AACGCACUGGCAGUAGCUG___GUUCCGGGAUUCACAAUGGAGGGCACAGGUGGCCAGGUGCCCGGCGGAACCUGCGGUGGCACCAAGGUGCCCACAAUCAGCUGCCUGGCGAG ..(((...((((((..(((.......))).......(((.(.((((((.....(((.(....).))).....((((.......)))).)))))).).))).))))))..))).. (-25.12 = -26.18 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:34 2006