Locus 1597

Sequence ID 3R_DroMel_CAF1
Location 4,586,035 – 4,586,129
Length 94
Max. P 0.664274
window2638

overview

Window 8

Location 4,586,035 – 4,586,129
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 81.90
Mean single sequence MFE -21.50
Consensus MFE -10.58
Energy contribution -12.14
Covariance contribution 1.56
Combinations/Pair 1.19
Mean z-score -2.28
Structure conservation index 0.49
SVM decision value 0.28
SVM RNA-class probability 0.664274
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4586035 94 + 27905053
GAGGUUGAAAAGUGCGGG-GCAAAUGAAAAAUGUCACUAAUUGCAGGCUGCAUUAUUGCAAAAUAUAUGUAUGUAAAUAUAUGUAC-AUAUAGUGU
..........(((((((.-((((.(((......)))....))))...)))))))...(((...((((((((((((....)))))))-))))).))) ( -22.30)
>DroSec_CAF1 9941 81 + 1
GAGGUUGAAAAGUGCGGGAGCAUAUGAAAAACCUCACUAAUUGCAGGCUGCAUUAUUGCAGAAUAUAU--------------GUGC-AUAUAGUGU
((((((.....((((....))))......))))))((((..((((.((((((....)))))......)--------------.)))-)..)))).. ( -25.90)
>DroSim_CAF1 10184 85 + 1
GAGGUUGAAAAGUGCGGGAGCAUAUGAAAAACCUCACUAAUUGCAGGCUGCAUUAUUGCAAAAUAUAUGUAU----------GUAC-AUAUAGUGU
((((((.....((((....))))......)))))).....((((((.........))))))..(((((((..----------..))-))))).... ( -23.00)
>DroEre_CAF1 9846 82 + 1
GAGCUUGAAAAGUGCGGGAGCAUAUGAAAUUCCUCACUAAUUGCAGGCUGCAUUAUUGCAACAUAUAUG--------------UAUUGCAUAGUAU
.((((((...((((.((((.(....)...)))).)))).....))))))(((....)))......((((--------------.....)))).... ( -19.90)
>DroYak_CAF1 10117 81 + 1
GAGGUUGAAAAGUGCGGGUGGCUGUGAAAUCCCUCACUAAUUGCACGCUGCAUUAUUGCGAAAUAUAUG--------------UAC-GUAUAGUAU
...........(((((((((((.((((......)))).....)).))))(((....)))........))--------------)))-......... ( -16.40)
>consensus
GAGGUUGAAAAGUGCGGGAGCAUAUGAAAAACCUCACUAAUUGCAGGCUGCAUUAUUGCAAAAUAUAUG_____________GUAC_AUAUAGUGU
((((((.....((((....))))......)))))).....((((((.........))))))................................... (-10.58 = -12.14 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:32 2006