Locus 1594

Sequence ID 3R_DroMel_CAF1
Location 4,574,738 – 4,574,828
Length 90
Max. P 0.978361
window2633

overview

Window 3

Location 4,574,738 – 4,574,828
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -16.10
Consensus MFE -14.38
Energy contribution -14.12
Covariance contribution -0.25
Combinations/Pair 1.13
Mean z-score -2.57
Structure conservation index 0.89
SVM decision value 1.81
SVM RNA-class probability 0.978361
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4574738 90 - 27905053
ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU
.....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... ( -16.30)
>DroSec_CAF1 31532 90 - 1
ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU
.....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... ( -16.30)
>DroSim_CAF1 32096 90 - 1
ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU
.....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... ( -16.30)
>DroYak_CAF1 32056 87 - 1
ACCAUGUUUUAUUUACAUUAAAUUAAACCGCUUUUUGUUUAUGAAGCA---UGGUCUAUAAAUAACCGGCACACAUUUAUGAAAUUCCAU
((((((((((((..(((..((..........))..)))..))))))))---)))).(((((((...........)))))))......... ( -15.50)
>consensus
ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU
.....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... (-14.38 = -14.12 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:27 2006