| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,563,663 – 4,563,776 |
| Length | 113 |
| Max. P | 0.585887 |
| Location | 4,563,663 – 4,563,776 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -43.87 |
| Consensus MFE | -27.33 |
| Energy contribution | -27.53 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4563663 113 - 27905053 CGAGACCAACAUGCUGACUAAAGAACCCAUGGGCAAUCCCAUCGCCGACUGCUACGGAAUGGUAGUGCGCGGAGACUCAGCUGCCAUGGC-CAUGGCAGAUGGUGUCAACUGGG------ .........................((((((((....)))).(((((.((((((.((.((((((((..(.(....).).))))))))..)-).)))))).))))).....))))------ ( -41.70) >DroVir_CAF1 23937 118 - 1 CGAGAACAAUAUGCUGACCAAGGAACCGAUGGGCAAUCCCAUUGCCGACUGCUAUGGCUGCGUUGUGCGUGGCGAUGCCGCGGCCAUGGC-CAUGGCCGAUGGCGUCAACUGGGGUGAG- .............((.(((.......(((((((....)))))))(((.........((..((.....))..))((((((((((((((...-.))))))).)))))))...)))))).))- ( -49.10) >DroPse_CAF1 17596 119 - 1 CGAAACGAAUAUGCUAACGAAAGAGCCCAUGGGUAAUCCCAUUGCCGAUUGUUAUGGCAUGGUAGUGCGUGGAGAUUCCGCUGCAAUGGC-CAUGGCAGAUGGCGUCAAUUGGGGUGAGG .................(....).(((((((((....))))).((((.((((((((((.......(((((((.....)))).)))...))-)))))))).))))........)))).... ( -43.00) >DroWil_CAF1 19787 113 - 1 CGAAAAUAAUAUGCUGACCAAGGAACCCAUCGGAAGUCCCAUUGCCGAUUGCUUUGGGCUGGUUGUUCGAGGCGAUUCCGCGGUCAUGGC-CAUGGCAGAUGGCGUCAAUUGGG------ .................((((...(((((((((.....))..(((((((((((((((((.....)))))))))))))....(((....))-)..))))))))).))...)))).------ ( -39.90) >DroAna_CAF1 17465 118 - 1 UGAGAACAACAUGCUCACCAAGGAGCCUAUGGGUAACCCCAUAGCCGACUGCUAUGGCAUGGUGGUUCGCGGAGACUCCGCCGCCAUGGC-CAUGGCUGAUGGCGUCAACUGGGGUCAG- .........(((((((......))))..)))....((((((..((((.(.((((((((((((((((..(.(....).).)))))))).))-)))))).).))))......))))))...- ( -50.40) >DroPer_CAF1 17574 119 - 1 CGAAACGAAUAUGCUAACUAAGGAUCCCAUGGGUAAUCCCAUUGCCUAUUGUUAUGGCAUGGUAGUGCGUGGGGAUUCCGCUGCAAUGGCCCAUGGCAGAUGGCGUCAAUUGGGGUGAG- .....................((((((((((((....))))).((((((..(......)..)))).))...)))))))((((.(((((((((((.....)))).))).)))).))))..- ( -39.10) >consensus CGAAAACAAUAUGCUGACCAAGGAACCCAUGGGUAAUCCCAUUGCCGACUGCUAUGGCAUGGUAGUGCGUGGAGAUUCCGCUGCCAUGGC_CAUGGCAGAUGGCGUCAACUGGGGUGAG_ .........................((((((((....))))..((((.((((((((((...(((((....((.....)))))))....)).)))))))).))))......))))...... (-27.33 = -27.53 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:19 2006