| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,552,727 – 4,552,834 |
| Length | 107 |
| Max. P | 0.773363 |
| Location | 4,552,727 – 4,552,834 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.36 |
| Mean single sequence MFE | -24.04 |
| Consensus MFE | -16.18 |
| Energy contribution | -15.46 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4552727 107 - 27905053 CAGCUGCCAAAUAAGAUACAAC--A----UUUUAAUUGAAGGAAUUAAUGUGUU--UCGUAGGGUAGGCUUACCAGAACACCGGUGAGCAAAUUGAUUUGUUGCAGCACUUUGCA ..((((((((((....((((((--(----(.((((((.....)))))).)))))--..)))......(((((((........)))))))......)))))..)))))........ ( -27.90) >DroVir_CAF1 8521 109 - 1 CAACUUCACAGU-UGGUUUAACAAAUUGUUUAUAAUUUAAUCAACGAUUAGACUUUGCACU-----GACUUACAAAAACGCCGGUAAGUAGCUUUAUUUGUCGCAAAAGUUGACG ((((((....((-(((((....((((((....))))))))))))).....(((........-----.((((((..........))))))..........)))....))))))... ( -17.91) >DroSec_CAF1 9758 102 - 1 CAGCUGCCAAAUAAGAUACAAC--A----UUUUAAUUGAAGGAAUUAAUGUGUU--UCGUA-----GGCUUACCAGAACACCGGUGAGCAAAUUGAUUUGUUGCAGCACUUUGCU ..((((((((((....((((((--(----(.((((((.....)))))).)))))--..)))-----.(((((((........)))))))......)))))..)))))........ ( -27.90) >DroSim_CAF1 9868 102 - 1 CAGCUGCCAAAUAAGAUACAAU--A----UUUUAAUUGAAGGAAUUCAUGUGUU--UCGUA-----GGCUUACCAGAACACCGGUGAGCAAAUUGAUUUGUUGCAGCACUUUGCG ..((((((((((.(((((((..--(----((((.......)))))...))))))--)....-----.(((((((........)))))))......)))))..)))))........ ( -25.90) >DroEre_CAF1 10020 102 - 1 CAGCUGCCAUAAAGGAUAUAAC--A----UUUUAAUUAAUGAAAUCAUUGUAUU--UCGUA-----GGCUUACCAGAACACCGGUGAGCAAGUUGAUUUGCUGCAGCACUUUCCG ..(((((..............(--(----((......))))........(((..--(((..-----.(((((((........)))))))....)))..))).)))))........ ( -25.70) >DroYak_CAF1 10028 102 - 1 CAGCUGCCAUAUUAGAUAUAAC--A----UUUGAAUUGAAGAAAUUAUUUUAUU--CCGUU-----GGCUUACCAGAAUACCAGUGAGCAAAUUGAUUUGUUGCAGCACUUUCCG ..(((((((.(((((......(--(----...((((.(((.......))).)))--)...)-----)((((((..........))))))...))))).))..)))))........ ( -18.90) >consensus CAGCUGCCAAAUAAGAUACAAC__A____UUUUAAUUGAAGGAAUUAAUGUAUU__UCGUA_____GGCUUACCAGAACACCGGUGAGCAAAUUGAUUUGUUGCAGCACUUUGCG ..(((((.......((((((.........(((.....)))........)))))).............(((((((........))))))).............)))))........ (-16.18 = -15.46 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:16 2006