Locus 1584

Sequence ID 3R_DroMel_CAF1
Location 4,539,546 – 4,539,656
Length 110
Max. P 0.829915
window2615

overview

Window 5

Location 4,539,546 – 4,539,656
Length 110
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.07
Mean single sequence MFE -21.22
Consensus MFE -14.35
Energy contribution -16.48
Covariance contribution 2.13
Combinations/Pair 1.07
Mean z-score -2.02
Structure conservation index 0.68
SVM decision value 0.71
SVM RNA-class probability 0.829915
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4539546 110 - 27905053
AUUUGCUGGUCAAGUGCCUCAACAAAAGGCU---AUGUUAUGAGCUUUUAACUCUACCUGCAUUUUUAAUAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACAAUCCUUUAUA-------
...(((.(((..(((.........(((((((---........))))))).)))..))).)))......((((((.....(((((..........))))).......)))))).------- ( -16.50)
>DroSec_CAF1 36771 111 - 1
AUUUGCUGGUCAAGUGCCUCAACAAAAGGCUCAUAACACAUGAGCUUUUAAC--UACCUGCACUUUUGAAAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACCAUACUUUAAA-------
(((((((..((((((((.......((((((((((.....))))))))))...--.....)))))..)))...)))))))(((((..........)))))..............------- ( -26.76)
>DroSim_CAF1 30688 111 - 1
AUUUGCUGGUCAAGUGCCUCAACAAAAGGCUCAUAACACAUGAGCAUUUAAC--UACCUGCACUUUUGAAAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACCAUACUUUAAA-------
(((((((..((((((((...........((((((.....)))))).......--.....)))))..)))...)))))))(((((..........)))))..............------- ( -23.60)
>DroYak_CAF1 37627 113 - 1
AUUUGCUGGUCAAGUGGCUCAACAAAAGGCUU--GUGUUAUUAGCGUUUAAC--UACCUGCACUU-UAAUAAAGCA-AUAUGGUAUCAUAAAUGAUCAUUAGAAU-CUUUAACUACGACU
.((((.((((((....(((.....((((((..--((((((........))))--.))..)).)))-).....))).-.((((....))))..)))))).))))..-.............. ( -18.00)
>consensus
AUUUGCUGGUCAAGUGCCUCAACAAAAGGCUC__AACACAUGAGCUUUUAAC__UACCUGCACUUUUAAAAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACAAUACUUUAAA_______
(((((((....((((((.......((((((((((.....))))))))))..........)))))).......)))))))(((((..........)))))..................... (-14.35 = -16.48 +   2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:10 2006